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cli-154-2226

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2024-04-19 08:24:46 +00:00
parent 158b328929
commit 6eb417125c
102 changed files with 290 additions and 249 deletions
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reference/mo_property.html
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@ -6,11 +6,11 @@
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
<nav class="navbar fixed-top navbar-dark navbar-expand-lg bg-primary"><div class="container">
<nav class="navbar fixed-top navbar-dark navbar-expand-lg bg-primary" data-bs-theme="dark"><div class="container">
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9018</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9021</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -385,6 +385,13 @@
<span></span>
<span><span class="fu">mo_current</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span></span>
<span></span>
<span><span class="fu">mo_group_members</span><span class="op">(</span></span>
<span> <span class="va">x</span>,</span>
<span> language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,</span>
<span> keep_synonyms <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/options.html" class="external-link">getOption</a></span><span class="op">(</span><span class="st">"AMR_keep_synonyms"</span>, <span class="cn">FALSE</span><span class="op">)</span>,</span>
<span> <span class="va">...</span></span>
<span><span class="op">)</span></span>
<span></span>
<span><span class="fu">mo_info</span><span class="op">(</span></span>
<span> <span class="va">x</span>,</span>
<span> language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,</span>
@ -558,6 +565,32 @@
<span class="r-in"><span><span class="fu">mo_is_yeast</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"Candida"</span>, <span class="st">"Trichophyton"</span>, <span class="st">"Klebsiella"</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] TRUE FALSE FALSE</span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu">mo_group_members</span><span class="op">(</span><span class="st">"Streptococcus group A"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "Streptococcus pyogenes"</span>
<span class="r-in"><span><span class="fu">mo_group_members</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"Streptococcus group C"</span>,</span></span>
<span class="r-in"><span> <span class="st">"Streptococcus group G"</span>,</span></span>
<span class="r-in"><span> <span class="st">"Streptococcus group L"</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $`Streptococcus Group C`</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "Streptococcus dysgalactiae" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [2] "Streptococcus dysgalactiae dysgalactiae"</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [3] "Streptococcus dysgalactiae equisimilis" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [4] "Streptococcus equi" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [5] "Streptococcus equi equi" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [6] "Streptococcus equi ruminatorum" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] "Streptococcus equi zooepidemicus" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $`Streptococcus Group G`</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "Streptococcus canis" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [2] "Streptococcus dysgalactiae" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [3] "Streptococcus dysgalactiae dysgalactiae"</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [4] "Streptococcus dysgalactiae equisimilis" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $`Streptococcus Group L`</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "Streptococcus dysgalactiae" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [2] "Streptococcus dysgalactiae dysgalactiae"</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [3] "Streptococcus dysgalactiae equisimilis" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-in"><span></span></span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="co"># scientific reference -----------------------------------------------------</span></span></span>
<span class="r-in"><span></span></span>
@ -803,6 +836,9 @@
<span class="r-out co"><span class="r-pr">#&gt;</span> $gbif</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "3221874"</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $group_members</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> character(0)</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-in"><span><span class="co"># }</span></span></span>
</code></pre></div>
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