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@ -38,7 +38,7 @@
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@ -385,19 +385,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 S I S R I S</span></span>
<span><span class="co"># 2 S R I I R I</span></span>
<span><span class="co"># 3 S S S S R R</span></span>
<span><span class="co"># 4 S R S I I R</span></span>
<span><span class="co"># 5 S I R S R I</span></span>
<span><span class="co"># 6 S R I R R S</span></span>
<span><span class="co"># 1 I R S S R I</span></span>
<span><span class="co"># 2 S S I S S I</span></span>
<span><span class="co"># 3 R S S S I R</span></span>
<span><span class="co"># 4 S I R I S R</span></span>
<span><span class="co"># 5 R I S S S S</span></span>
<span><span class="co"># 6 R R R S R I</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 I</span></span>
<span><span class="co"># 1 R</span></span>
<span><span class="co"># 2 S</span></span>
<span><span class="co"># 3 S</span></span>
<span><span class="co"># 4 R</span></span>
<span><span class="co"># 5 I</span></span>
<span><span class="co"># 6 S</span></span></code></pre></div>
<span><span class="co"># 4 I</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 6 I</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -438,40 +438,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3144</td>
<td align="right">62.88%</td>
<td align="right">3144</td>
<td align="right">62.88%</td>
<td align="right">3179</td>
<td align="right">63.58%</td>
<td align="right">3179</td>
<td align="right">63.58%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">1032</td>
<td align="right">20.64%</td>
<td align="right">4176</td>
<td align="right">83.52%</td>
<td align="right">1012</td>
<td align="right">20.24%</td>
<td align="right">4191</td>
<td align="right">83.82%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">465</td>
<td align="right">9.30%</td>
<td align="right">4641</td>
<td align="right">92.82%</td>
<td align="right">455</td>
<td align="right">9.10%</td>
<td align="right">4646</td>
<td align="right">92.92%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">263</td>
<td align="right">5.26%</td>
<td align="right">4904</td>
<td align="right">98.08%</td>
<td align="right">247</td>
<td align="right">4.94%</td>
<td align="right">4893</td>
<td align="right">97.86%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">96</td>
<td align="right">1.92%</td>
<td align="right">107</td>
<td align="right">2.14%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>