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(v1.4.0.9000) more extensive unit tests

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dr. M.S. (Matthijs) Berends
2020-10-15 09:46:41 +02:00
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commit 833a1be36d
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docs/reference/as.ab.html
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@ -82,7 +82,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9000</span>
</span>
</div>
@ -242,9 +242,9 @@
<p>Use this function to determine the antibiotic code of one or more antibiotics. The data set <a href='antibiotics.html'>antibiotics</a> will be searched for abbreviations, official names and synonyms (brand names).</p>
</div>
<pre class="usage"><span class='fu'>as.ab</span>(<span class='kw'>x</span>, flag_multiple_results = <span class='fl'>TRUE</span>, info = <span class='fl'>TRUE</span>, <span class='kw'>...</span>)
<pre class="usage"><span class='fu'>as.ab</span><span class='op'>(</span><span class='va'>x</span>, flag_multiple_results <span class='op'>=</span> <span class='cn'>TRUE</span>, info <span class='op'>=</span> <span class='cn'>TRUE</span>, <span class='va'>...</span><span class='op'>)</span>
<span class='fu'>is.ab</span>(<span class='kw'>x</span>)</pre>
<span class='fu'>is.ab</span><span class='op'>(</span><span class='va'>x</span><span class='op'>)</span></pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
<table class="ref-arguments">
@ -325,27 +325,27 @@ This package contains <strong>all ~550 antibiotic, antimycotic and antiviral dru
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><span class='co'># these examples all return "ERY", the ID of erythromycin:</span>
<span class='fu'>as.ab</span>(<span class='st'>"J01FA01"</span>)
<span class='fu'>as.ab</span>(<span class='st'>"J 01 FA 01"</span>)
<span class='fu'>as.ab</span>(<span class='st'>"Erythromycin"</span>)
<span class='fu'>as.ab</span>(<span class='st'>"eryt"</span>)
<span class='fu'>as.ab</span>(<span class='st'>" eryt 123"</span>)
<span class='fu'>as.ab</span>(<span class='st'>"ERYT"</span>)
<span class='fu'>as.ab</span>(<span class='st'>"ERY"</span>)
<span class='fu'>as.ab</span>(<span class='st'>"eritromicine"</span>) <span class='co'># spelled wrong, yet works</span>
<span class='fu'>as.ab</span>(<span class='st'>"Erythrocin"</span>) <span class='co'># trade name</span>
<span class='fu'>as.ab</span>(<span class='st'>"Romycin"</span>) <span class='co'># trade name</span>
<span class='fu'>as.ab</span><span class='op'>(</span><span class='st'>"J01FA01"</span><span class='op'>)</span>
<span class='fu'>as.ab</span><span class='op'>(</span><span class='st'>"J 01 FA 01"</span><span class='op'>)</span>
<span class='fu'>as.ab</span><span class='op'>(</span><span class='st'>"Erythromycin"</span><span class='op'>)</span>
<span class='fu'>as.ab</span><span class='op'>(</span><span class='st'>"eryt"</span><span class='op'>)</span>
<span class='fu'>as.ab</span><span class='op'>(</span><span class='st'>" eryt 123"</span><span class='op'>)</span>
<span class='fu'>as.ab</span><span class='op'>(</span><span class='st'>"ERYT"</span><span class='op'>)</span>
<span class='fu'>as.ab</span><span class='op'>(</span><span class='st'>"ERY"</span><span class='op'>)</span>
<span class='fu'>as.ab</span><span class='op'>(</span><span class='st'>"eritromicine"</span><span class='op'>)</span> <span class='co'># spelled wrong, yet works</span>
<span class='fu'>as.ab</span><span class='op'>(</span><span class='st'>"Erythrocin"</span><span class='op'>)</span> <span class='co'># trade name</span>
<span class='fu'>as.ab</span><span class='op'>(</span><span class='st'>"Romycin"</span><span class='op'>)</span> <span class='co'># trade name</span>
<span class='co'># spelling from different languages and dyslexia are no problem</span>
<span class='fu'><a href='ab_property.html'>ab_atc</a></span>(<span class='st'>"ceftriaxon"</span>)
<span class='fu'><a href='ab_property.html'>ab_atc</a></span>(<span class='st'>"cephtriaxone"</span>) <span class='co'># small spelling error</span>
<span class='fu'><a href='ab_property.html'>ab_atc</a></span>(<span class='st'>"cephthriaxone"</span>) <span class='co'># or a bit more severe</span>
<span class='fu'><a href='ab_property.html'>ab_atc</a></span>(<span class='st'>"seephthriaaksone"</span>) <span class='co'># and even this works</span>
<span class='fu'><a href='ab_property.html'>ab_atc</a></span><span class='op'>(</span><span class='st'>"ceftriaxon"</span><span class='op'>)</span>
<span class='fu'><a href='ab_property.html'>ab_atc</a></span><span class='op'>(</span><span class='st'>"cephtriaxone"</span><span class='op'>)</span> <span class='co'># small spelling error</span>
<span class='fu'><a href='ab_property.html'>ab_atc</a></span><span class='op'>(</span><span class='st'>"cephthriaxone"</span><span class='op'>)</span> <span class='co'># or a bit more severe</span>
<span class='fu'><a href='ab_property.html'>ab_atc</a></span><span class='op'>(</span><span class='st'>"seephthriaaksone"</span><span class='op'>)</span> <span class='co'># and even this works</span>
<span class='co'># use ab_* functions to get a specific properties (see ?ab_property);</span>
<span class='co'># they use as.ab() internally:</span>
<span class='fu'><a href='ab_property.html'>ab_name</a></span>(<span class='st'>"J01FA01"</span>) <span class='co'># "Erythromycin"</span>
<span class='fu'><a href='ab_property.html'>ab_name</a></span>(<span class='st'>"eryt"</span>) <span class='co'># "Erythromycin"</span>
<span class='fu'><a href='ab_property.html'>ab_name</a></span><span class='op'>(</span><span class='st'>"J01FA01"</span><span class='op'>)</span> <span class='co'># "Erythromycin"</span>
<span class='fu'><a href='ab_property.html'>ab_name</a></span><span class='op'>(</span><span class='st'>"eryt"</span><span class='op'>)</span> <span class='co'># "Erythromycin"</span>
</pre>
</div>
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@ -362,7 +362,7 @@ This package contains <strong>all ~550 antibiotic, antimycotic and antiviral dru
</div>
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