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(v1.4.0.9000) more extensive unit tests

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dr. M.S. (Matthijs) Berends
2020-10-15 09:46:41 +02:00
parent 28e77680c5
commit 833a1be36d
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14
docs/reference/mo_matching_score.html
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@ -82,7 +82,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9000</span>
</span>
</div>
@ -242,7 +242,7 @@
<p>This helper function is used by <code><a href='as.mo.html'>as.mo()</a></code> to determine the most probable match of taxonomic records, based on user input.</p>
</div>
<pre class="usage"><span class='fu'>mo_matching_score</span>(<span class='kw'>x</span>, <span class='kw'>n</span>)</pre>
<pre class="usage"><span class='fu'>mo_matching_score</span><span class='op'>(</span><span class='va'>x</span>, <span class='va'>n</span><span class='op'>)</span></pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
<table class="ref-arguments">
@ -276,11 +276,11 @@
<p>All matches are sorted descending on their matching score and for all user input values, the top match will be returned. This will lead to the effect that e.g., <code>"E. coli"</code> will return the microbial ID of <em>Escherichia coli</em> (\(m = 0.688\), a highly prevalent microorganism found in humans) and not <em>Entamoeba coli</em> (\(m = 0.079\), a less prevalent microorganism in humans), although the latter would alphabetically come first.</p>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><span class='fu'><a href='as.mo.html'>as.mo</a></span>(<span class='st'>"E. coli"</span>)
<span class='fu'><a href='as.mo.html'>mo_uncertainties</a></span>()
<pre class="examples"><span class='fu'><a href='as.mo.html'>as.mo</a></span><span class='op'>(</span><span class='st'>"E. coli"</span><span class='op'>)</span>
<span class='fu'><a href='as.mo.html'>mo_uncertainties</a></span><span class='op'>(</span><span class='op'>)</span>
<span class='fu'>mo_matching_score</span>(x = <span class='st'>"E. coli"</span>,
n = <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='st'>"Escherichia coli"</span>, <span class='st'>"Entamoeba coli"</span>))
<span class='fu'>mo_matching_score</span><span class='op'>(</span>x <span class='op'>=</span> <span class='st'>"E. coli"</span>,
n <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"Escherichia coli"</span>, <span class='st'>"Entamoeba coli"</span><span class='op'>)</span><span class='op'>)</span>
</pre>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
@ -297,7 +297,7 @@
</div>
<div class="pkgdown">
<p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.5.1.9000.</p>
<p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
</div>
</footer>