(v1.4.0.9000) more extensive unit tests

2025-07-11 15:01:53 +02:00 · 2020-10-15 09:46:41 +02:00
parent 28e77680c5
commit 833a1be36d
74 changed files with 2047 additions and 2120 deletions
--- a/docs/reference/plot.html
+++ b/docs/reference/plot.html
@ -82,7 +82,7 @@
      </button>
      <span class="navbar-brand">
        <a class="navbar-link" href="../index.html">AMR (for R)</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9000</span>
      </span>
    </div>

@ -243,48 +243,48 @@
    </div>

    <pre class="usage"><span class='co'># S3 method for mic</span>
-<span class='fu'>plot</span>(
-  <span class='kw'>x</span>,
-  main = <span class='fu'><a href='https://rdrr.io/r/base/paste.html'>paste</a></span>(<span class='st'>"MIC values of"</span>, <span class='fu'><a href='https://rdrr.io/r/base/deparse.html'>deparse</a></span>(<span class='fu'><a href='https://rdrr.io/r/base/substitute.html'>substitute</a></span>(<span class='kw'>x</span>))),
-  ylab = <span class='st'>"Frequency"</span>,
-  xlab = <span class='st'>"MIC value"</span>,
-  axes = <span class='fl'>FALSE</span>,
-  <span class='kw'>...</span>
-)
+<span class='fu'>plot</span><span class='op'>(</span>
+  <span class='va'>x</span>,
+  main <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/paste.html'>paste</a></span><span class='op'>(</span><span class='st'>"MIC values of"</span>, <span class='fu'><a href='https://rdrr.io/r/base/deparse.html'>deparse</a></span><span class='op'>(</span><span class='fu'><a href='https://rdrr.io/r/base/substitute.html'>substitute</a></span><span class='op'>(</span><span class='va'>x</span><span class='op'>)</span><span class='op'>)</span><span class='op'>)</span>,
+  ylab <span class='op'>=</span> <span class='st'>"Frequency"</span>,
+  xlab <span class='op'>=</span> <span class='st'>"MIC value"</span>,
+  axes <span class='op'>=</span> <span class='cn'>FALSE</span>,
+  <span class='va'>...</span>
+<span class='op'>)</span>

 <span class='co'># S3 method for mic</span>
-<span class='fu'><a href='https://rdrr.io/r/graphics/barplot.html'>barplot</a></span>(
-  <span class='kw'>height</span>,
-  main = <span class='fu'><a href='https://rdrr.io/r/base/paste.html'>paste</a></span>(<span class='st'>"MIC values of"</span>, <span class='fu'><a href='https://rdrr.io/r/base/deparse.html'>deparse</a></span>(<span class='fu'><a href='https://rdrr.io/r/base/substitute.html'>substitute</a></span>(<span class='kw'>height</span>))),
-  ylab = <span class='st'>"Frequency"</span>,
-  xlab = <span class='st'>"MIC value"</span>,
-  axes = <span class='fl'>FALSE</span>,
-  <span class='kw'>...</span>
-)
+<span class='fu'><a href='https://rdrr.io/r/graphics/barplot.html'>barplot</a></span><span class='op'>(</span>
+  <span class='va'>height</span>,
+  main <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/paste.html'>paste</a></span><span class='op'>(</span><span class='st'>"MIC values of"</span>, <span class='fu'><a href='https://rdrr.io/r/base/deparse.html'>deparse</a></span><span class='op'>(</span><span class='fu'><a href='https://rdrr.io/r/base/substitute.html'>substitute</a></span><span class='op'>(</span><span class='va'>height</span><span class='op'>)</span><span class='op'>)</span><span class='op'>)</span>,
+  ylab <span class='op'>=</span> <span class='st'>"Frequency"</span>,
+  xlab <span class='op'>=</span> <span class='st'>"MIC value"</span>,
+  axes <span class='op'>=</span> <span class='cn'>FALSE</span>,
+  <span class='va'>...</span>
+<span class='op'>)</span>

 <span class='co'># S3 method for rsi</span>
-<span class='fu'>plot</span>(
-  <span class='kw'>x</span>,
-  lwd = <span class='fl'>2</span>,
-  ylim = <span class='kw'>NULL</span>,
-  ylab = <span class='st'>"Percentage"</span>,
-  xlab = <span class='st'>"Antimicrobial Interpretation"</span>,
-  main = <span class='fu'><a href='https://rdrr.io/r/base/paste.html'>paste</a></span>(<span class='st'>"Resistance Overview of"</span>, <span class='fu'><a href='https://rdrr.io/r/base/deparse.html'>deparse</a></span>(<span class='fu'><a href='https://rdrr.io/r/base/substitute.html'>substitute</a></span>(<span class='kw'>x</span>))),
-  axes = <span class='fl'>FALSE</span>,
-  <span class='kw'>...</span>
-)
+<span class='fu'>plot</span><span class='op'>(</span>
+  <span class='va'>x</span>,
+  lwd <span class='op'>=</span> <span class='fl'>2</span>,
+  ylim <span class='op'>=</span> <span class='cn'>NULL</span>,
+  ylab <span class='op'>=</span> <span class='st'>"Percentage"</span>,
+  xlab <span class='op'>=</span> <span class='st'>"Antimicrobial Interpretation"</span>,
+  main <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/paste.html'>paste</a></span><span class='op'>(</span><span class='st'>"Resistance Overview of"</span>, <span class='fu'><a href='https://rdrr.io/r/base/deparse.html'>deparse</a></span><span class='op'>(</span><span class='fu'><a href='https://rdrr.io/r/base/substitute.html'>substitute</a></span><span class='op'>(</span><span class='va'>x</span><span class='op'>)</span><span class='op'>)</span><span class='op'>)</span>,
+  axes <span class='op'>=</span> <span class='cn'>FALSE</span>,
+  <span class='va'>...</span>
+<span class='op'>)</span>

 <span class='co'># S3 method for rsi</span>
-<span class='fu'><a href='https://rdrr.io/r/graphics/barplot.html'>barplot</a></span>(
-  <span class='kw'>height</span>,
-  col = <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='st'>"chartreuse4"</span>, <span class='st'>"chartreuse3"</span>, <span class='st'>"brown3"</span>),
-  xlab = <span class='fu'><a href='https://rdrr.io/r/base/ifelse.html'>ifelse</a></span>(<span class='kw'>beside</span>, <span class='st'>"Antimicrobial Interpretation"</span>, <span class='st'>""</span>),
-  main = <span class='fu'><a href='https://rdrr.io/r/base/paste.html'>paste</a></span>(<span class='st'>"Resistance Overview of"</span>, <span class='fu'><a href='https://rdrr.io/r/base/deparse.html'>deparse</a></span>(<span class='fu'><a href='https://rdrr.io/r/base/substitute.html'>substitute</a></span>(<span class='kw'>height</span>))),
-  ylab = <span class='st'>"Frequency"</span>,
-  beside = <span class='fl'>TRUE</span>,
-  axes = <span class='kw'>beside</span>,
-  <span class='kw'>...</span>
-)</pre>
+<span class='fu'><a href='https://rdrr.io/r/graphics/barplot.html'>barplot</a></span><span class='op'>(</span>
+  <span class='va'>height</span>,
+  col <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"chartreuse4"</span>, <span class='st'>"chartreuse3"</span>, <span class='st'>"brown3"</span><span class='op'>)</span>,
+  xlab <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/ifelse.html'>ifelse</a></span><span class='op'>(</span><span class='va'>beside</span>, <span class='st'>"Antimicrobial Interpretation"</span>, <span class='st'>""</span><span class='op'>)</span>,
+  main <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/paste.html'>paste</a></span><span class='op'>(</span><span class='st'>"Resistance Overview of"</span>, <span class='fu'><a href='https://rdrr.io/r/base/deparse.html'>deparse</a></span><span class='op'>(</span><span class='fu'><a href='https://rdrr.io/r/base/substitute.html'>substitute</a></span><span class='op'>(</span><span class='va'>height</span><span class='op'>)</span><span class='op'>)</span><span class='op'>)</span>,
+  ylab <span class='op'>=</span> <span class='st'>"Frequency"</span>,
+  beside <span class='op'>=</span> <span class='cn'>TRUE</span>,
+  axes <span class='op'>=</span> <span class='va'>beside</span>,
+  <span class='va'>...</span>
+<span class='op'>)</span></pre>

    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
    <table class="ref-arguments">
@ -375,7 +375,7 @@ The <a href='lifecycle.html'>lifecycle</a> of this function is <strong>stable</s
 </div>

 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.5.1.9000.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
 </div>

      </footer>