(v1.6.0.9032) unit tests

.github/workflows/check.yaml

@@ -108,6 +108,12 @@ jobs:
         run: |
           sudo apt install -y libssl-dev pandoc pandoc-citeproc libxml2-dev libicu-dev libcurl4-openssl-dev
 
+      - name: Install AMR package
+        if: always()
+        run: |
+          R CMD install data-raw/AMR_latest.tar.gz
+        shell: bash
+
       - name: Update package dependencies
         run: |
           source("data-raw/_install_deps.R")

DESCRIPTION

@@ -1,5 +1,5 @@
 Package: AMR
-Version: 1.6.0.9031
+Version: 1.6.0.9032
 Date: 2021-05-15
 Title: Antimicrobial Resistance Data Analysis
 Authors@R: c(

NEWS.md

@@ -1,4 +1,4 @@
-# `AMR` 1.6.0.9031
+# `AMR` 1.6.0.9032
 ## <small>Last updated: 15 May 2021</small>
 
 ### New

data-raw/_install_deps.R

@@ -23,7 +23,7 @@
 # how to conduct AMR data analysis: https://msberends.github.io/AMR/   #
 # ==================================================================== #
 
-pkg_suggests <- trimws(unlist(strsplit(packageDescription("AMR")$Suggests, ",(\n)?")))
+pkg_suggests <- AMR:::trimws(unlist(strsplit(packageDescription("AMR")$Suggests, ",(\n)?")))
 
 to_install <- pkg_suggests[!pkg_suggests %in% rownames(utils::installed.packages())]
 to_update <- as.data.frame(old.packages(), stringsAsFactors = FALSE)