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(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'

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dr. M.S. (Matthijs) Berends
2025-01-17 12:09:39 +01:00
parent 1697ad37ce
commit 92c4fc0f94
33 changed files with 1029 additions and 807 deletions
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man/mean_amr_distance.Rd
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@@ -18,7 +18,7 @@ amr_distance_from_row(amr_distance, row)
\arguments{
\item{x}{a vector of class \link[=as.sir]{sir}, \link[=as.mic]{mic} or \link[=as.disk]{disk}, or a \link{data.frame} containing columns of any of these classes}
\item{...}{variables to select (supports \link[tidyselect:language]{tidyselect language} such as \code{column1:column4} and \code{where(is.mic)}, and can thus also be \link[=ab_selector]{antibiotic selectors}}
\item{...}{variables to select (supports \link[tidyselect:language]{tidyselect language} such as \code{column1:column4} and \code{where(is.mic)}, and can thus also be \link[=amr_selector]{antimicrobial selectors}}
\item{combine_SI}{a \link{logical} to indicate whether all values of S, SDD, and I must be merged into one, so the input only consists of S+I vs. R (susceptible vs. resistant) - the default is \code{TRUE}}