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Update README.md
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@ -10,6 +10,8 @@ This R package contains functions to make microbiological, epidemiological data
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AMR can also be predicted for the forthcoming years with the `rsi_predict` function. For use with the `dplyr` package, the `rsi` function can be used in conjunction with `summarise` to calculate the resistance percentages of different antibiotic columns of a table.
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It also contains functions to translate antibiotic codes from the lab (like `"AMOX"`) or the [WHO](https://www.whocc.no/atc_ddd_index/?code=J01CA04&showdescription=no) (like `"J01CA04"`) to trivial names (like `"amoxicillin"`) and vice versa.
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## How to use it?
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```r
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# Call it with:
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@ -73,7 +75,7 @@ Other epidemiological functions:
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```r
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# Apply EUCAST Expert Rules v3.1 (latest) to antibiotic columns
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interpretive_reading(...)
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EUCAST_rules(...)
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# Determine key antibiotic based on bacteria ID
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key_antibiotics(...)
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@ -91,11 +93,6 @@ rsi_predict(...)
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# Get name of antibiotic by ATC code
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abname(...)
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abname("J01CR02", from = "atc", to = "umcg") # "AMCL"
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# Calculate age of patients
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age(...)
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# Categorize patients age to age groups
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age.group(...)
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```
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## How to get it?
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