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fix antibiotics error

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dr. M.S. (Matthijs) Berends
2022-10-30 21:05:46 +01:00
parent d40e0ef20b
commit 9444ed6d1d
37 changed files with 86 additions and 97 deletions
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NEWS.md
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# AMR 1.8.2.9038
# AMR 1.8.2.9039
This version will eventually become v2.0! We're happy to reach a new major milestone soon!
@ -42,7 +42,7 @@ This version will eventually become v2.0! We're happy to reach a new major miles
* Fix for using `as.rsi()` on `NA` values (e.g. `as.rsi(as.disk(NA), ...)`)
* Fix for using `as.rsi()` on drug-drug combinations with multiple breakpoints for different body sites
* Removed `as.integer()` for MIC values, since MIC are not integer values and running `table()` on MIC values consequently failed for not being able to retrieve the level position (as that's how normally `as.integer()` on `factor`s work)
* `droplevels()` on MIC will now return a common `factor` at default and will lose the `<mic>` class. Use `droplevels(..., as.mic = TRUE)` to keep the `<mic>` class.
* `droplevels()` on MIC will now return a common `factor` at default and will lose the `mic` class. Use `droplevels(..., as.mic = TRUE)` to keep the `mic` class.
* Small fix for using `ab_from_text()`
* Fixes for reading in text files using `set_mo_source()`, which now also allows the source file to contain valid taxonomic names instead of only valid microorganism ID of this package
* Using any `random_*()` function (such as `random_mic()`) is now possible by directly calling the package without loading it first: `AMR::random_mic(10)`