fix antibiotics error

data-raw/_pre_commit_hook.R

@@ -488,14 +488,14 @@ suppressMessages(devtools::document(quiet = TRUE))
 
 
 # Style pkg ---------------------------------------------------------------
-if (interactive()) {
-  # only when sourcing this file ourselves
-  usethis::ui_info("Styling package")
-  styler::style_pkg(
-    style = styler::tidyverse_style,
-    filetype = c("R", "Rmd")
-  )
-}
+# if (interactive()) {
+#   # only when sourcing this file ourselves
+#   usethis::ui_info("Styling package")
+#   styler::style_pkg(
+#     style = styler::tidyverse_style,
+#     filetype = c("R", "Rmd")
+#   )
+# }
 
 
 # Finished ----------------------------------------------------------------

data-raw/ab.md5

@@ -1 +1 @@
-0d0c3c1acd57b331824a413d72ce4c7f
+43220347c34d06a5c57f2014a8ecaa82

data-raw/antibiotics.txt

@@ -122,8 +122,7 @@
 "CZP"	9578661	"Ceftizoxime alapivoxil"	"Cephalosporins (3rd gen.)"	"NA"			""	""					""
 "BPR"	135413542	"Ceftobiprole"	"Cephalosporins (5th gen.)"	"NA"			""	"ceftobiprole"					""
 "CFM1"	135413544	"Ceftobiprole medocaril"	"Cephalosporins (5th gen.)"	"J01DI01"	"Other beta-lactam antibacterials"	"Other cephalosporins and penems"	""	""			1.5	"g"	""
-"CEI"		"Ceftolozane/tazobactam"	"Cephalosporins (5th gen.)"	"J01DI54"	"Other beta-lactam antibacterials"	"Other cephalosporins and penems"	""	"zerbaxa"			3	"g"	""
-"CZT"		"Ceftolozane/tazobactam"	"Cephalosporins (5th gen.)"	"NA"			""	"zerbaxa"					""
+"CZT"	86291594	"Ceftolozane/tazobactam"	"Cephalosporins (5th gen.)"	"J01DI54"	"Other beta-lactam antibacterials"	"Other cephalosporins and penems"	"CEI"	"zerbaxa"			3	"g"	""
 "CRO"	5479530	"Ceftriaxone"	"Cephalosporins (3rd gen.)"	"J01DD04"	"Other beta-lactam antibacterials"	"Third-generation cephalosporins"	"axo,cax,cftr,cro,ctr,frx,tx"	"biotrakson,cefatriaxone,cefatriaxone hydrate,ceftriaxon,ceftriaxona,ceftriaxone,ceftriaxone sodium,ceftriaxonum,ceftriazone,cephtriaxone,longacef,rocefin,rocephalin,rocephin,rocephine,rophex"			2	"g"	"25244-5,3451-2,80957-4"
 "CEB"		"Ceftriaxone/beta-lactamase inhibitor"	"Cephalosporins (3rd gen.)"	"J01DD63"	"Other beta-lactam antibacterials"	"Third-generation cephalosporins"	""	""			2	"g"	""
 "CXM"	5479529	"Cefuroxime"	"Cephalosporins (2nd gen.)"	"J01DC02,S01AA27"	"Other beta-lactam antibacterials"	"Second-generation cephalosporins"	"cfrx,cfur,cfx,crm,cxm,fur,rox,xm"	"biofuroksym,cefuril,cefuroxim,cefuroxima,cefuroxime,cefuroxime acid,cefuroximine,cefuroximo,cefuroximum,cephuroxime,kefurox,sharox,zinacef,zinacef danmark"	0.5	"g"	3	"g"	"25245-2,3452-0,80608-3,80617-4"

data-raw/dosage.md5

@@ -1 +1 @@
-21f4808065fcad26bdf869a693b074d2
+e000567383fb9289741ed2360d10f72f

data-raw/dosage.txt

@@ -51,8 +51,8 @@
 "CXM"	"Cefuroxime"	"high_dosage"	"0.5 g"	2	"oral"	""	"0.5 g x 2 oral"	11
 "CXM"	"Cefuroxime"	"standard_dosage"	"0.25 g"	2	"oral"	""	"0.25 g x 2 oral"	11
 "CXM"	"Cefuroxime"	"uncomplicated_uti"	"0.25 g"	2	"oral"	""	"0.25 g x 2 oral"	11
-"LEX"	"Cephalexin"	"standard_dosage"	"0.25-1 g"	2	"oral"	""	"0.25-1 g x 2-3 oral"	11
-"LEX"	"Cephalexin"	"uncomplicated_uti"	"0.25-1 g"	2	"oral"	""	"0.25-1 g x 2-3 oral"	11
+"LEX"	"Cefalexin"	"standard_dosage"	"0.25-1 g"	2	"oral"	""	"0.25-1 g x 2-3 oral"	11
+"LEX"	"Cefalexin"	"uncomplicated_uti"	"0.25-1 g"	2	"oral"	""	"0.25-1 g x 2-3 oral"	11
 "CHL"	"Chloramphenicol"	"high_dosage"	"2 g"	4	"iv"	""	"2 g x 4 iv"	11
 "CHL"	"Chloramphenicol"	"standard_dosage"	"1 g"	4	"iv"	""	"1 g x 4 iv"	11
 "CHL"	"Chloramphenicol"	"high_dosage"	"2 g"	4	"oral"	""	"2 g x 4 oral"	11