P281424/AMR
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fix antibiotics error

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dr. M.S. (Matthijs) Berends committed 2022-10-30 21:05:46 +01:00
1 parent d40e0ef20b
commit 9444ed6d1d
37 files changed
+86 -97
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inst/tinytest/test-add_custom_antimicrobials.R
+6 -6
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@@ -27,17 +27,17 @@
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
expect_warning(as.ab("test"))
expect_identical(as.character(suppressWarnings(as.ab("test"))), NA_character_)
expect_warning(as.ab("testab"))
expect_identical(as.character(suppressWarnings(as.ab("testab"))), NA_character_)
suppressMessages(
add_custom_antimicrobials(
data.frame(ab = "TEST",
data.frame(ab = "TESTAB",
name = "Test Antibiotic",
group = "Test Group")
)
)
expect_identical(as.character(as.ab("test")), "TEST")
expect_identical(ab_name("test"), "Test Antibiotic")
expect_identical(ab_group("test"), "Test Group")
expect_identical(as.character(as.ab("testab")), "TESTAB")
expect_identical(ab_name("testab"), "Test Antibiotic")
expect_identical(ab_group("testab"), "Test Group")