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fix antibiotics error
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@ -24,7 +24,7 @@ utils::file.edit("~/.Rprofile")
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# Add custom antibiotic codes:
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library(AMR)
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add_custom_antimicrobials(
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data.frame(ab = "TEST",
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data.frame(ab = "TESTAB",
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name = "Test Antibiotic",
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group = "Test Group")
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)
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@ -37,14 +37,14 @@ Use \code{\link[=clear_custom_antimicrobials]{clear_custom_antimicrobials()}} to
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# returns NA and throws a warning (which is now suppressed):
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suppressWarnings(
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as.ab("test")
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as.ab("testab")
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)
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# now add a custom entry - it will be considered by as.ab() and
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# all ab_*() functions
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add_custom_antimicrobials(
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data.frame(
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ab = "TEST",
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ab = "TESTAB",
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name = "Test Antibiotic",
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# you can add any property present in the
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# 'antibiotics' data set, such as 'group':
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@ -52,12 +52,12 @@ add_custom_antimicrobials(
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)
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)
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# "test" is now a new antibiotic:
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as.ab("test")
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ab_name("test")
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ab_group("test")
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# "testab" is now a new antibiotic:
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as.ab("testab")
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ab_name("testab")
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ab_group("testab")
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ab_info("test")
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ab_info("testab")
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# Add Co-fluampicil, which is one of the many J01CR50 codes, see
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@ -75,7 +75,7 @@ ab_name("J01CR50")
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# even antibiotic selectors work
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x <- data.frame(
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random_column = "test",
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random_column = "some value",
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coflu = as.rsi("S"),
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ampicillin = as.rsi("R")
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)
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