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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9144</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9146</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -99,43 +99,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 2 0.002 128 128 0.0625 32 4 128 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.5 0.025 256 4 16 0.025 0.025 4 256 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 8 4 0.005 4 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 128 0.0625 32 4 128 0.0625 0.5 0.025 256 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 16 0.025 0.025 4 256 0.5 8 4 0.005 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.01 0.0625 0.025 64 4 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 10 21 42 49 34 17 35 45 37 36 16 17 25 47 47 41 47 10 6 31 33 37 29 14</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 35 45 37 36 16 17 25 47 47 40 50 10 6 31 33 37 29 14 33 41 31 7 13 46 42</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S S I I S S S I R S R S I S I S S I S I S R S R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S R S I S I S S I S I S R S R R R I S S I S S R S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 0.5 2 32 0.005 0.025 0.5 >=128 0.0625 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.0625 4 4 8 0.001 16 >=128 0.25 0.025 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 16 0.0625 0.0625 >=128 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.0625 0.25 0.0625 16 4 1 4 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 8 0.5 <=0.001 8 16 <=0.001 4 0.25 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 16 0.005 0.025 16 0.0625 0.0625 <=0.001</span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 1 16 4 32 0.5 8 8 8 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.5 <=0.25 2 32 0.5 4 32 0.5 <=0.25 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 2 8 <=0.25 8 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 2 2 32 8 >=64 1 16 16 16 16 1 0.5 4 >=64</span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 1 8 >=64 1 0.5 32 4 16 0.5 16 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 2 0.125 8 4 2 0.125 2 0.5 0.5 16 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 1 0.25 0.25 0.25 2 8 0.125 0.125 2 8 4 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.5 0.5 0.5 0.025 2 1 0.5 0.025 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.125 0.125 4 0.25 0.25 0.0625 0.0625 0.0625 0.5 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.025 0.025 0.5 2 1 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 25 17 40 14 34 35 40 45 18 35 24 42 48 45 19 31 45 9 35 26 30 26 48 10 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 42 21 25 17 47 14 34 35 40 45 18 35 24 40 48 45 19 31 45 9 35 26 30 26 48</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 17 14 11 14 14 14 17 17 17 14 17 15 12 12 12 15 16 17 14 16 14 13 12 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 13 13 17 14 11 14 14 14 17 17 17 14 17 15 12 12 12 15 16 17 14 16 14 13</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 20 18 27 18 15 18 17 16 20 24 21 25 21 25 18 23 25 17 24 17 16 20 18 25</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 24 20 26 20 18 27 18 15 18 17 16 20 24 21 25 21 25 18 23 25 17 24 17 16 20</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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