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(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47

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dr. M.S. (Matthijs) Berends
2021-08-16 21:54:34 +02:00
parent 4e1efd902c
commit a2d249962f
248 changed files with 2377 additions and 12201 deletions
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29
NAMESPACE
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@ -5,6 +5,7 @@ S3method("!=",ab_selector)
S3method("!=",mic)
S3method("%%",mic)
S3method("%/%",mic)
S3method("&",ab_selector)
S3method("&",mic)
S3method("*",mic)
S3method("+",mic)
@ -35,6 +36,7 @@ S3method("[[<-",mic)
S3method("[[<-",mo)
S3method("[[<-",rsi)
S3method("^",mic)
S3method("|",ab_selector)
S3method("|",mic)
S3method(abs,mic)
S3method(acos,mic)
@ -161,22 +163,28 @@ export(ab_atc_group2)
export(ab_cid)
export(ab_class)
export(ab_ddd)
export(ab_ddd_units)
export(ab_from_text)
export(ab_group)
export(ab_info)
export(ab_loinc)
export(ab_name)
export(ab_property)
export(ab_selector)
export(ab_synonyms)
export(ab_tradenames)
export(ab_url)
export(administrable_iv)
export(administrable_per_os)
export(age)
export(age_groups)
export(all_antimicrobials)
export(aminoglycosides)
export(aminopenicillins)
export(anti_join_microorganisms)
export(antifungals)
export(antimicrobials_equal)
export(antimycobacterials)
export(as.ab)
export(as.disk)
export(as.mic)
@ -212,24 +220,7 @@ export(eucast_dosage)
export(eucast_exceptional_phenotypes)
export(eucast_rules)
export(facet_rsi)
export(filter_1st_cephalosporins)
export(filter_2nd_cephalosporins)
export(filter_3rd_cephalosporins)
export(filter_4th_cephalosporins)
export(filter_5th_cephalosporins)
export(filter_ab_class)
export(filter_aminoglycosides)
export(filter_betalactams)
export(filter_carbapenems)
export(filter_cephalosporins)
export(filter_first_isolate)
export(filter_first_weighted_isolate)
export(filter_fluoroquinolones)
export(filter_glycopeptides)
export(filter_macrolides)
export(filter_oxazolidinones)
export(filter_penicillins)
export(filter_tetracyclines)
export(first_isolate)
export(fluoroquinolones)
export(full_join_microorganisms)
@ -253,8 +244,6 @@ export(is.rsi.eligible)
export(is_new_episode)
export(italicise_taxonomy)
export(italicize_taxonomy)
export(key_antibiotics)
export(key_antibiotics_equal)
export(key_antimicrobials)
export(kurtosis)
export(labels_rsi_count)
@ -323,12 +312,14 @@ export(rsi_predict)
export(scale_rsi_colours)
export(scale_y_percent)
export(semi_join_microorganisms)
export(set_ab_names)
export(set_mo_source)
export(skewness)
export(streptogramins)
export(susceptibility)
export(tetracyclines)
export(theme_rsi)
export(trimethoprims)
export(ureidopenicillins)
importFrom(graphics,arrows)
importFrom(graphics,axis)