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(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47

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dr. M.S. (Matthijs) Berends
2021-08-16 21:54:34 +02:00
parent 4e1efd902c
commit a2d249962f
248 changed files with 2377 additions and 12201 deletions
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6
R/eucast_rules.R
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@ -320,9 +320,9 @@ eucast_rules <- function(x,
x <- trimws(unique(toupper(unlist(strsplit(x, ",")))))
x_new <- character()
for (val in x) {
if (val %in% ls(envir = asNamespace("AMR"))) {
# antibiotic group names, as defined in data-raw/_internals.R, such as `CARBAPENEMS`
val <- eval(parse(text = val), envir = asNamespace("AMR"))
if (paste0("AB_", val) %in% ls(envir = asNamespace("AMR"))) {
# antibiotic group names, as defined in data-raw/_internals.R, such as `AB_CARBAPENEMS`
val <- eval(parse(text = paste0("AB_", val)), envir = asNamespace("AMR"))
} else if (val %in% AB_lookup$ab) {
# separate drugs, such as `AMX`
val <- as.ab(val)