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(v1.7.1.9024) unit tests

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dr. M.S. (Matthijs) Berends
2021-08-17 14:34:11 +02:00
parent a2d249962f
commit a44283f998
99 changed files with 550 additions and 501 deletions
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60
man/antibiotic_class_selectors.Rd
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@ -33,63 +33,63 @@
\alias{ureidopenicillins}
\title{Antibiotic Selectors}
\usage{
ab_class(ab_class, only_rsi_columns = FALSE, only_treatable = TRUE)
ab_class(ab_class, only_rsi_columns = FALSE, only_treatable = TRUE, ...)
ab_selector(filter, only_rsi_columns = FALSE, only_treatable = TRUE)
ab_selector(filter, only_rsi_columns = FALSE, only_treatable = TRUE, ...)
administrable_per_os(only_rsi_columns = FALSE)
administrable_per_os(only_rsi_columns = FALSE, ...)
administrable_iv(only_rsi_columns = FALSE)
administrable_iv(only_rsi_columns = FALSE, ...)
aminoglycosides(only_rsi_columns = FALSE, only_treatable = TRUE)
aminoglycosides(only_rsi_columns = FALSE, only_treatable = TRUE, ...)
aminopenicillins(only_rsi_columns = FALSE)
aminopenicillins(only_rsi_columns = FALSE, ...)
antifungals(only_rsi_columns = FALSE)
antifungals(only_rsi_columns = FALSE, ...)
antimycobacterials(only_rsi_columns = FALSE)
antimycobacterials(only_rsi_columns = FALSE, ...)
betalactams(only_rsi_columns = FALSE, only_treatable = TRUE)
betalactams(only_rsi_columns = FALSE, only_treatable = TRUE, ...)
carbapenems(only_rsi_columns = FALSE, only_treatable = TRUE)
carbapenems(only_rsi_columns = FALSE, only_treatable = TRUE, ...)
cephalosporins(only_rsi_columns = FALSE)
cephalosporins(only_rsi_columns = FALSE, ...)
cephalosporins_1st(only_rsi_columns = FALSE)
cephalosporins_1st(only_rsi_columns = FALSE, ...)
cephalosporins_2nd(only_rsi_columns = FALSE)
cephalosporins_2nd(only_rsi_columns = FALSE, ...)
cephalosporins_3rd(only_rsi_columns = FALSE)
cephalosporins_3rd(only_rsi_columns = FALSE, ...)
cephalosporins_4th(only_rsi_columns = FALSE)
cephalosporins_4th(only_rsi_columns = FALSE, ...)
cephalosporins_5th(only_rsi_columns = FALSE)
cephalosporins_5th(only_rsi_columns = FALSE, ...)
fluoroquinolones(only_rsi_columns = FALSE)
fluoroquinolones(only_rsi_columns = FALSE, ...)
glycopeptides(only_rsi_columns = FALSE)
glycopeptides(only_rsi_columns = FALSE, ...)
lincosamides(only_rsi_columns = FALSE)
lincosamides(only_rsi_columns = FALSE, ...)
lipoglycopeptides(only_rsi_columns = FALSE)
lipoglycopeptides(only_rsi_columns = FALSE, ...)
macrolides(only_rsi_columns = FALSE)
macrolides(only_rsi_columns = FALSE, ...)
oxazolidinones(only_rsi_columns = FALSE)
oxazolidinones(only_rsi_columns = FALSE, ...)
penicillins(only_rsi_columns = FALSE)
penicillins(only_rsi_columns = FALSE, ...)
polymyxins(only_rsi_columns = FALSE, only_treatable = TRUE)
polymyxins(only_rsi_columns = FALSE, only_treatable = TRUE, ...)
streptogramins(only_rsi_columns = FALSE)
streptogramins(only_rsi_columns = FALSE, ...)
quinolones(only_rsi_columns = FALSE)
quinolones(only_rsi_columns = FALSE, ...)
tetracyclines(only_rsi_columns = FALSE)
tetracyclines(only_rsi_columns = FALSE, ...)
trimethoprims(only_rsi_columns = FALSE)
trimethoprims(only_rsi_columns = FALSE, ...)
ureidopenicillins(only_rsi_columns = FALSE)
ureidopenicillins(only_rsi_columns = FALSE, ...)
}
\arguments{
\item{ab_class}{an antimicrobial class, such as \code{"carbapenems"}. The columns \code{group}, \code{atc_group1} and \code{atc_group2} of the \link{antibiotics} data set will be searched (case-insensitive) for this value.}
@ -98,6 +98,8 @@ ureidopenicillins(only_rsi_columns = FALSE)
\item{only_treatable}{a \link{logical} to indicate whether agents that are only for laboratory tests should be excluded (defaults to \code{TRUE}), such as gentamicin-high (\code{GEH}) and imipenem/EDTA (\code{IPE})}
\item{...}{ignored, only in place to allow future extensions}
\item{filter}{an \link{expression} to be evaluated in the \link{antibiotics} data set, such as \code{name \%like\% "trim"}}
}
\value{