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AMR
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unit test

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dr. M.S. (Matthijs) Berends 2023-04-15 10:32:37 +02:00
parent 1a02d302d4
commit ad3061c754
3 changed files with 4 additions and 9 deletions
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2
DESCRIPTION
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@ -1,5 +1,5 @@
Package: AMR
Version: 2.0.0.9007
Version: 2.0.0.9008
Date: 2023-04-15
Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR)

2
NEWS.md
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# AMR 2.0.0.9007
# AMR 2.0.0.9008
## Changed
* formatting fix for `sir_interpretation_history()`

9
inst/tinytest/test-mo.R
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@ -279,13 +279,8 @@ expect_equal(suppressWarnings(as.mo("Virus")), as.mo("UNKNOWN"))
expect_equal(length(summary(example_isolates$mo)), 6)
# WHONET codes and NA/NaN
expect_equal(
as.character(as.mo(c("xxx", "na", "nan"))),
rep(NA_character_, 3)
)
expect_equal(as.character(as.mo("con")), "UNKNOWN")
expect_equal(as.character(as.mo("xxx")), NA_character_)
expect_equal(as.character(as.mo(c("xxx", "con", "eco"))), c(NA_character_, "UNKNOWN", "B_ESCHR_COLI"))
expect_true(all(is.na(as.mo(c("xxx", "na", "nan")))))
expect_equal(as.character(as.mo(c("con", "eco"))), c("UNKNOWN", "B_ESCHR_COLI"))
expect_equal(
as.character(suppressWarnings(as.mo(c("other", "none", "unknown")))),
rep("UNKNOWN", 3)