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mirror of https://github.com/msberends/AMR.git synced 2024-12-25 18:46:11 +01:00

(v2.1.1.9041) antibiotics update

This commit is contained in:
dr. M.S. (Matthijs) Berends 2024-06-08 17:35:25 +02:00
parent e2acc513a5
commit af74e1d4f2
26 changed files with 110 additions and 67 deletions

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@ -28,7 +28,6 @@
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
#!/bin/bash
#######################################
# This script runs on commit-msg hook #
@ -56,6 +55,3 @@ fi
# Prepend the version number to the commit message
echo "(v${currentversion}) ${COMMIT_MSG}" > "$COMMIT_MSG_FILE"
# Print the updated commit message for verification
echo "Updated commit message: $(cat "$COMMIT_MSG_FILE")"

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@ -1,4 +1,4 @@
#!/bin/sh
#!/bin/bash
# ==================================================================== #
# TITLE: #
@ -118,9 +118,4 @@ if [ -e "NEWS.md" ]; then
else
echo "- no NEWS.md found!"
fi
# set the version number as an environment variable for the commit-msg hook
export COMMIT_VERSION=$currentversion
echo "- exported COMMIT_VERSION=${currentversion} for the commit-msg hook"
echo ""

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@ -1,6 +1,6 @@
Package: AMR
Version: 2.1.1.9040
Date: 2024-06-07
Version: 2.1.1.9041
Date: 2024-06-08
Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR)
data analysis and to work with microbial and antimicrobial properties by

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@ -286,6 +286,7 @@ export(mo_url)
export(mo_year)
export(mrgn)
export(n_sir)
export(nitrofurans)
export(not_intrinsic_resistant)
export(oxazolidinones)
export(pca)
@ -305,6 +306,7 @@ export(rescale_mic)
export(reset_AMR_locale)
export(resistance)
export(resistance_predict)
export(rifamycins)
export(right_join_microorganisms)
export(scale_colour_mic)
export(scale_fill_mic)

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@ -1,4 +1,4 @@
# AMR 2.1.1.9040
# AMR 2.1.1.9041
*(this beta version will eventually become v3.0. We're happy to reach a new major milestone soon, which will be all about the new One Health support!)*
@ -22,6 +22,8 @@ This package now supports not only tools for AMR data analysis in clinical setti
## Changed
* For SIR interpretation, it is now possible to use column names for argument `ab`, `mo`, and `uti`: `as.sir(..., ab = "column1", mo = "column2", uti = "column3")`. This greatly improves the flexibility for users.
* Extended the antibiotic selectors with `nitrofurans()` and `rifamycins()`
* Added "clindamycin inducible screening" as `CLI1` to the `antibiotics` data set. Since clindamycin is a lincosamide, the antibiotic selector `lincosamides()` now contains the argument `only_treatable = TRUE` (similar to other antibiotic selectors that contain non-treatable drugs)
* For MICs:
* Added as valid levels: 4096, 6 powers of 0.0625, and 5 powers of 192 (192, 384, 576, 768, 960)
* Added new argument `keep_operators` to `as.mic()`. This can be `"all"` (default), `"none"`, or `"edges"`. This argument is also available in the new `rescale_mic()` and `scale_*_mic()` functions.
@ -36,6 +38,7 @@ This package now supports not only tools for AMR data analysis in clinical setti
* Fix for using a manual value for `mo_transform` in `antibiogram()`
* Fix for mapping 'high level' antibiotics in `as.ab()` (amphotericin B-high, gentamicin-high, kanamycin-high, streptomycin-high, tobramycin-high)
* Improved overall algorithm of `as.ab()` for better performance and accuracy
* When using antibiotic selectors such as `aminoglycosides()` that exclude non-treatable drugs like gentamicin-high, the function now always returns a warning that these can be included using `only_treatable = FALSE`
## Other
* Added Jordan Stull, Matthew Saab, and Javier Sanchez as contributors, to thank them for their valuable input

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@ -367,9 +367,10 @@ glycopeptides <- function(only_sir_columns = FALSE, ...) {
#' @rdname antibiotic_class_selectors
#' @export
lincosamides <- function(only_sir_columns = FALSE, ...) {
lincosamides <- function(only_sir_columns = FALSE, only_treatable = TRUE, ...) {
meet_criteria(only_sir_columns, allow_class = "logical", has_length = 1)
ab_select_exec("lincosamides", only_sir_columns = only_sir_columns)
meet_criteria(only_treatable, allow_class = "logical", has_length = 1)
ab_select_exec("lincosamides", only_sir_columns = only_sir_columns, only_treatable = only_treatable)
}
#' @rdname antibiotic_class_selectors
@ -386,6 +387,13 @@ macrolides <- function(only_sir_columns = FALSE, ...) {
ab_select_exec("macrolides", only_sir_columns = only_sir_columns)
}
#' @rdname antibiotic_class_selectors
#' @export
nitrofurans <- function(only_sir_columns = FALSE, ...) {
meet_criteria(only_sir_columns, allow_class = "logical", has_length = 1)
ab_select_exec("nitrofurans", only_sir_columns = only_sir_columns)
}
#' @rdname antibiotic_class_selectors
#' @export
oxazolidinones <- function(only_sir_columns = FALSE, ...) {
@ -410,16 +418,23 @@ polymyxins <- function(only_sir_columns = FALSE, only_treatable = TRUE, ...) {
#' @rdname antibiotic_class_selectors
#' @export
streptogramins <- function(only_sir_columns = FALSE, ...) {
quinolones <- function(only_sir_columns = FALSE, ...) {
meet_criteria(only_sir_columns, allow_class = "logical", has_length = 1)
ab_select_exec("streptogramins", only_sir_columns = only_sir_columns)
ab_select_exec("quinolones", only_sir_columns = only_sir_columns)
}
#' @rdname antibiotic_class_selectors
#' @export
quinolones <- function(only_sir_columns = FALSE, ...) {
rifamycins <- function(only_sir_columns = FALSE, ...) {
meet_criteria(only_sir_columns, allow_class = "logical", has_length = 1)
ab_select_exec("quinolones", only_sir_columns = only_sir_columns)
ab_select_exec("rifamycins", only_sir_columns = only_sir_columns)
}
#' @rdname antibiotic_class_selectors
#' @export
streptogramins <- function(only_sir_columns = FALSE, ...) {
meet_criteria(only_sir_columns, allow_class = "logical", has_length = 1)
ab_select_exec("streptogramins", only_sir_columns = only_sir_columns)
}
#' @rdname antibiotic_class_selectors
@ -579,9 +594,9 @@ ab_select_exec <- function(function_name,
# untreatable drugs
if (only_treatable == TRUE) {
untreatable <- AMR_env$AB_lookup[which(AMR_env$AB_lookup$name %like% "-high|EDTA|polysorbate|macromethod|screening|/nacubactam"), "ab", drop = TRUE]
untreatable <- AMR_env$AB_lookup[which(AMR_env$AB_lookup$name %like% "-high|EDTA|polysorbate|macromethod|screening|nacubactam"), "ab", drop = TRUE]
if (any(untreatable %in% names(ab_in_data))) {
if (message_not_thrown_before(function_name, "ab_class", "untreatable", entire_session = TRUE)) {
if (message_not_thrown_before(function_name, "ab_class", "untreatable")) {
warning_(
"in `", function_name, "()`: some drugs were ignored since they cannot be used for treating patients: ",
vector_and(
@ -591,8 +606,7 @@ ab_select_exec <- function(function_name,
),
quotes = FALSE,
sort = TRUE
), ". They can be included using `", function_name, "(only_treatable = FALSE)`. ",
"This warning will be shown once per session."
), ". They can be included using `", function_name, "(only_treatable = FALSE)`."
)
}
ab_in_data <- ab_in_data[!names(ab_in_data) %in% untreatable]

11
R/mic.R
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@ -43,6 +43,9 @@ VALID_MIC_LEVELS <- c(t(vapply(FUN.VALUE = character(length(VALID_MIC_LEVELS)),
c("<", "<=", "", ">=", ">"),
paste0,
VALID_MIC_LEVELS)))
COMMON_MIC_VALUES <- c(0.001, 0.002, 0.004, 0.008, 0.016, 0.032, 0.064,
0.125, 0.25, 0.5, 1, 2, 4, 8, 16, 32,
64, 128, 256, 512, 1024)
#' Transform Input to Minimum Inhibitory Concentrations (MIC)
#'
@ -300,10 +303,10 @@ rescale_mic <- function(x, mic_range, keep_operators = "edges", as.mic = TRUE) {
}
# create a manual factor with levels only within desired range
expanded <- range_as_table(x,
expand = TRUE,
keep_operators = ifelse(keep_operators == "edges", "none", keep_operators),
mic_range = mic_range)
expanded <- plotrange_as_table(x,
expand = TRUE,
keep_operators = ifelse(keep_operators == "edges", "none", keep_operators),
mic_range = mic_range)
if (keep_operators == "edges") {
names(expanded)[1] <- paste0("<=", names(expanded)[1])
names(expanded)[length(expanded)] <- paste0(">=", names(expanded)[length(expanded)])

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@ -195,7 +195,7 @@ plot.mic <- function(x,
}
main <- gsub(" +", " ", paste0(main, collapse = " "))
x <- range_as_table(x, expand = expand)
x <- plotrange_as_table(x, expand = expand)
cols_sub <- plot_colours_subtitle_guideline(
x = x,
mo = mo,
@ -327,7 +327,7 @@ autoplot.mic <- function(object,
}
object <- as.mic(object) # make sure that currently implemented MIC levels are used
x <- range_as_table(object, expand = expand)
x <- plotrange_as_table(object, expand = expand)
cols_sub <- plot_colours_subtitle_guideline(
x = x,
mo = mo,
@ -392,7 +392,7 @@ autoplot.mic <- function(object,
fortify.mic <- function(object, ...) {
object <- as.mic(object) # make sure that currently implemented MIC levels are used
stats::setNames(
as.data.frame(range_as_table(object, expand = FALSE)),
as.data.frame(plotrange_as_table(object, expand = FALSE)),
c("x", "y")
)
}
@ -430,7 +430,7 @@ plot.disk <- function(x,
}
main <- gsub(" +", " ", paste0(main, collapse = " "))
x <- range_as_table(x, expand = expand)
x <- plotrange_as_table(x, expand = expand)
cols_sub <- plot_colours_subtitle_guideline(
x = x,
mo = mo,
@ -559,7 +559,7 @@ autoplot.disk <- function(object,
title <- gsub(" +", " ", paste0(title, collapse = " "))
}
x <- range_as_table(object, expand = expand)
x <- plotrange_as_table(object, expand = expand)
cols_sub <- plot_colours_subtitle_guideline(
x = x,
mo = mo,
@ -624,7 +624,7 @@ autoplot.disk <- function(object,
# will be exported using s3_register() in R/zzz.R
fortify.disk <- function(object, ...) {
stats::setNames(
as.data.frame(range_as_table(object, expand = FALSE)),
as.data.frame(plotrange_as_table(object, expand = FALSE)),
c("x", "y")
)
}
@ -789,26 +789,15 @@ fortify.sir <- function(object, ...) {
)
}
range_as_table <- function(x, expand, keep_operators = "all", mic_range = NULL) {
plotrange_as_table <- function(x, expand, keep_operators = "all", mic_range = NULL) {
x <- x[!is.na(x)]
if (is.mic(x)) {
x <- as.mic(x, keep_operators = keep_operators)
if (expand == TRUE) {
# expand range for MIC by adding factors of 2 from lowest to highest so all MICs in between also print
extra_range <- max(x)
min_range <- min(x)
if (!is.null(mic_range)) {
if (!is.na(mic_range[2])) {
extra_range <- as.mic(mic_range[2]) * 2
}
if (!is.na(mic_range[1])) {
min_range <- as.mic(mic_range[1])
}
}
extra_range <- extra_range / 2
while (min(extra_range) / 2 > min_range) {
extra_range <- c(min(extra_range) / 2, extra_range)
}
# expand range for MIC by adding common intermediate factors levels
extra_range <- COMMON_MIC_VALUES[COMMON_MIC_VALUES > min(x, na.rm = TRUE) & COMMON_MIC_VALUES < max(x, na.rm = TRUE)]
# remove the ones that are in 25% range of user values
extra_range <- extra_range[!vapply(FUN.VALUE = logical(1), extra_range, function(r) any(abs(r - x) / x < 0.25, na.rm = TRUE))]
nms <- extra_range
extra_range <- rep(0, length(extra_range))
names(extra_range) <- nms

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@ -244,6 +244,7 @@ translate_into_language <- function(from,
# starting with longest pattern, since more general translations are shorter, such as 'Group'
order(nchar(df_trans$pattern), decreasing = TRUE),
function(i) {
if (df_trans$pattern[i] %like% "[/]") return(df_trans$pattern[i])
from_unique_translated <<- gsub(
pattern = df_trans$pattern[i],
replacement = df_trans[i, lang, drop = TRUE],

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@ -181,10 +181,10 @@ AB_AMINOGLYCOSIDES <- antibiotics %>%
filter(group %like% "aminoglycoside") %>%
pull(ab)
AB_AMINOPENICILLINS <- as.ab(c("AMP", "AMX"))
AB_ANTIFUNGALS <- AMR_env$AB_lookup %>%
AB_ANTIFUNGALS <- antibiotics %>%
filter(group %like% "antifungal") %>%
pull(ab)
AB_ANTIMYCOBACTERIALS <- AMR_env$AB_lookup %>%
AB_ANTIMYCOBACTERIALS <- antibiotics %>%
filter(group %like% "antimycobacterial") %>%
pull(ab)
AB_CARBAPENEMS <- antibiotics %>%
@ -221,7 +221,10 @@ AB_LINCOSAMIDES <- antibiotics %>%
filter(atc_group2 %like% "lincosamide" | (group %like% "lincosamide" & is.na(atc_group2))) %>%
pull(ab)
AB_MACROLIDES <- antibiotics %>%
filter(atc_group2 %like% "macrolide" | (group %like% "macrolide" & is.na(atc_group2))) %>%
filter(atc_group2 %like% "macrolide" | (group %like% "macrolide" & is.na(atc_group2) & name %unlike% "screening|inducible")) %>%
pull(ab)
AB_NITROFURANS <- antibiotics %>%
filter(name %like% "^furaz|nitrofura" | atc_group2 %like% "nitrofuran") %>%
pull(ab)
AB_OXAZOLIDINONES <- antibiotics %>%
filter(group %like% "oxazolidinone") %>%
@ -235,6 +238,9 @@ AB_POLYMYXINS <- antibiotics %>%
AB_QUINOLONES <- antibiotics %>%
filter(group %like% "quinolone") %>%
pull(ab)
AB_RIFAMYCINS <- antibiotics %>%
filter(name %like% "Rifampi|Rifabutin|Rifapentine|rifamy") %>%
pull(ab)
AB_STREPTOGRAMINS <- antibiotics %>%
filter(atc_group2 %like% "streptogramin") %>%
pull(ab)
@ -310,10 +316,12 @@ suppressMessages(usethis::use_data(EUCAST_RULES_DF,
AB_GLYCOPEPTIDES_EXCEPT_LIPO,
AB_LINCOSAMIDES,
AB_MACROLIDES,
AB_NITROFURANS,
AB_OXAZOLIDINONES,
AB_PENICILLINS,
AB_POLYMYXINS,
AB_QUINOLONES,
AB_RIFAMYCINS,
AB_STREPTOGRAMINS,
AB_TETRACYCLINES,
AB_TETRACYCLINES_EXCEPT_TGC,

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@ -1 +1 @@
85e31c828b6f1795c8cb18b568f15c3e
3e7a1cbb21b49cdc7626ea3016a017cc

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@ -137,13 +137,14 @@
"CIX" 47472 "Ciclopirox" "Antifungals/antimycotics" "D01AE14,G01AX12" "Antifungals for topical use" "Other antifungals for topical use" "cipx" "butaconazole,butoconazol,butoconazole,butoconazolum,ciclodan,ciclopirox,ciclopirox gel,ciclopirox olamin,ciclopiroxum,compositenstarke,dahlin,femstat,gynofort,loprox,loprox cream,loprox gel,penlac,polyfructosanum,stieprox" ""
"CIN" 2762 "Cinoxacin" "Quinolones" "J01MB06" "Quinolone antibacterials" "Other quinolones" "cino,cnox" "azolinic acid,cinobac,cinobactin,cinoxacin,cinoxacine,cinoxacino,cinoxacinum,clinoxacin,noxigram,uronorm" 1 "g" "180-0,181-8,182-6,183-4,18905-0,55656-3"
"CIP" 2764 "Ciprofloxacin" "Quinolones" "J01MA02,S01AE03,S02AA15,S03AA07" "Quinolone antibacterials" "Fluoroquinolones" "ci,cip,cipr,cp" "alcon cilox,auripro,bacquinor,baflox,baycip,bernoflox,cetraxal,ciflox,cifloxin,ciloxan,ciplus,ciprecu,ciprine,ciprinol,cipro i.v.,cipro iv,cipro xl,cipro xr,ciprobay,ciprobay uro,ciprocinol,ciprodar,ciproflox,ciprofloxacin,ciprofloxacina,ciprofloxacine,ciprofloxacino,ciprofloxacinum,ciprogis,ciprolin,ciprolon,cipromycin,ciproquinol,ciprowin,ciproxan,ciproxin,ciproxina,ciproxine,ciriax,citopcin,corsacin,cyprobay,fimoflox,flociprin,ipiflox,italnik,linhaliq,otiprio,probiox,proflaxin,quinolid,quintor,rancif,roxytal,septicide,sophixin ofteno,spitacin,superocin,velmonit,velomonit,zumaflox" 1 "g" 0.8 "g" "101500-7,14031-9,14032-7,14058-2,14059-0,184-2,185-9,186-7,187-5,18906-8,20377-8,23621-6,25180-1,25181-9,25188-4,25189-2,25248-6,34636-1,3484-3,42644-5,55194-5,7002-9"
"CIM" "Ciprofloxacin/metronidazole" "Other antibacterials" "J01RA10" "Combinations of antibacterials" "Combinations of antibacterials" "" "" ""
"CIO" "Ciprofloxacin/ornidazole" "Other antibacterials" "J01RA12" "Combinations of antibacterials" "Combinations of antibacterials" "" "" ""
"CIT" "Ciprofloxacin/tinidazole" "Other antibacterials" "J01RA11" "Combinations of antibacterials" "Combinations of antibacterials" "" "" ""
"CIM" "Ciprofloxacin/metronidazole" "Quinolones" "J01RA10" "Combinations of antibacterials" "Combinations of antibacterials" "" "" ""
"CIO" "Ciprofloxacin/ornidazole" "Quinolones" "J01RA12" "Combinations of antibacterials" "Combinations of antibacterials" "" "" ""
"CIT" "Ciprofloxacin/tinidazole" "Quinolones" "J01RA11" "Combinations of antibacterials" "Combinations of antibacterials" "" "" ""
"CLR" 84029 "Clarithromycin" "Macrolides/lincosamides" "J01FA09" "Macrolides, lincosamides and streptogramins" "Macrolides" "ch,cla,clar,clm,clr" "abbotic,astromen,biaxin,biaxin filmtab,biaxin hp,biaxin xl,biaxin xl filmtab,bicrolid,clacee,clacid,clacine,clambiotic,clarem,claribid,claricide,claridar,claripen,clarith,clarithromycin,clarithromycine,clarithromycinum,claritromicina,clathromycin,crixan,cyllid,cyllind,fromilid,heliclar,klabax,klacid,klaciped,klaricid,klaricid h.p,klaricid h.p.,klaricid pediatric,klaricid xl,klarid,klarin,kofron,mabicrol,macladin,maclar,prevpac,veclam,vikrol,zeclar" 0.5 "g" 1 "g" "100048-8,16619-9,16620-7,188-3,189-1,18907-6,190-9,191-7,20375-2,23619-0,25190-0,25191-8,25192-6,25253-6,34638-7,43987-7,43990-1,43991-9,7003-7,80559-8,89485-7"
"CLA1" 5280980 "Clavulanic acid" "Other antibacterials" "NA" "" "acide clavulanique,acido clavulanico,acidum clavulanicum,clavulanate,clavulanate acid,clavulanate lithium,clavulanateacid,clavulanic acid,clavulansaeure,clavulansaure,clavulinic acid,clavulox,serdaxin,sodium clavulanate" ""
"CLX" 60063 "Clinafloxacin" "Quinolones" "NA" "" "clinafloxacin" "32376-6,33284-1,35785-5,35786-3,7004-5"
"CLI" 446598 "Clindamycin" "Macrolides/lincosamides" "D10AF01,G01AA10,J01FF01" "Macrolides, lincosamides and streptogramins" "Lincosamides" "cc,cd,cli,clin,cm,da" "antirobe,chlolincocin,clindaderm,clindamicina,clindamycin,clindamycine,clindamycinum,clinimycin,dalacin c,dalacine,klimicin,sobelin" 1.2 "g" 1.8 "g" "16621-5,16622-3,18908-4,192-5,193-3,194-1,195-8,25249-4,3486-8,42720-3,55657-1,55658-9,55659-7,55660-5,61188-9,7005-2"
"CLI1" "Clindamycin inducible screening" "Macrolides/lincosamides" "NA" "clindamycin inducible,clinda inducible,clin inducible" "" ""
"CLF" 2794 "Clofazimine" "Antimycobacterials" "J04BA01" "Drugs for treatment of lepra" "Drugs for treatment of lepra" "clof" "chlofazimine,clofazimin,clofazimina,clofazimine,clofaziminum,colfazimine,lampren,lamprene,riminophenazine" 0.1 "g" "16623-1,20376-0,23620-8,23627-3,43986-9,43988-5,43989-3,55661-3,55662-1,96108-6"
"CLF1" 2799 "Clofoctol" "Other antibacterials" "J01XX03" "Other antibacterials" "Other antibacterials" "" "clofoctol,clofoctolo,clofoctolum,gramplus,octofene" ""
"CLM" 71807 "Clometocillin" "Beta-lactams/penicillins" "J01CE07" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "" "chlomethocillin,clometacillin,clometocilina,clometocillin,clometocilline,clometocillinum,rixapen" 1 "g" ""

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@ -735,6 +735,18 @@ antibiotics <- antibiotics %>%
))
antibiotics[which(antibiotics$ab %in% c("CYC", "LNZ", "THA", "TZD")), "group"] <- "Oxazolidinones"
# add clindamycin inducible screening
clin <- antibiotics |>
filter(ab == "FOX1") |>
mutate(ab = as.character("CLI1"),
name = "Clindamycin inducible screening",
group = "Macrolides/lincosamides")
antibiotics <- antibiotics |>
mutate(ab = as.character(ab)) |>
bind_rows(clin)
class(antibiotics$ab) <- c("ab", "character")
antibiotics[which(antibiotics$ab == "CLI1"), "abbreviations"][[1]] <- list(c("clindamycin inducible", "clinda inducible", "clin inducible"))
# add pretomanid
antibiotics <- antibiotics %>%
mutate(ab = as.character(ab)) %>%

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@ -73,6 +73,7 @@ Bacitracin FALSE TRUE TRUE FALSE 阿奇霉素 Bacitracin Bacitracin Bacitracine
Benzathine benzylpenicillin FALSE TRUE TRUE FALSE 苄丝肼青霉素 Benzathine benzylpenicillin Benzathinbenzylpenicillin Benzylpenicillinebenzathine Bentsatiinibentsyylipenisilliini Benzathine benzylpénicilline Benzathin-Benzylpenicillin Βενζαθίνη βενζυλπενικιλλίνη Benzatina benzilpenicillina ベンズシン・ベンジルペニシリン Benzathine benzylpenicillin Benzylpenicylina benzylowa Benzatina benzatina benzilpenicilina Benzatină benzilpenicilină Бензатин бензилпенициллин Bencilpenicilina benzatínica Benzathinbenzylpenicillin Benzatin benzilpenisilin Бензатину бензилпеніцилін
Benzathine phenoxymethylpenicillin FALSE TRUE TRUE FALSE 苄星苯氧甲基青霉素 Benzatinový fenoxymethylpenicilin Benzathinfenoxymethylpenicillin Fenoxymethylpenicillinebenzathine Bentsatiinifenoksimetyylipenisilliini Phénoxyméthylpénicilline benzathine Benzathin-Phenoxymethylpenicillin Βενζαθίνη φαινοξυμεθυλοπενικιλλίνη Benzatina fenossimetilpenicillina ベンザチンフェノキシメチルペニシリン Benzathine fenoksymetylpenicillin Fenoksymetylopenicylina benzylowa Benzatina fenoximetilpenicilina Benzatină fenoximetilpenicilină Бензатин феноксиметилпенициллин Fenoximetilpenicilina benzatínica Bensathinfenoximetylpenicillin Benzatin fenoksimetilpenisilin Бензатину феноксиметилпеніцилін
Benzylpenicillin FALSE TRUE TRUE FALSE 苄基青霉素 Benzylpenicilin Benzylpenicillin Benzylpenicilline Bentsyylipenisilliini Benzylpénicilline Benzylpenicillin Βενζυλοπενικιλλίνη Benzilpenicillina ベンジルペニシリン Benzylpenicillin Benzylpenicylina Benzilpenicilina Benzilpenicilină Бензилпенициллин Bencilpenicilina Bensylpenicillin Benzilpenisilin Бензилпеніцилін
Cadazolid FALSE TRUE TRUE FALSE 卡达唑利德 Kadazolid Cadazolid Cadazolid Kadazolid Cadazolid Cadazolid Καδαζολίδη Cadazolid カダゾリド Cadazolid Kadazolid Cadazolid Cadazolid Кадазолид Cadazolid Cadazolid Cadazolid Кадазолід
Calcium aminosalicylate FALSE TRUE TRUE FALSE 氨基水杨酸钙 Aminosalicylát vápenatý Calciumaminosalicylat Aminosalicylzuur Kalsiumaminosalisylaatti Aminosalicylate de calcium Kalzium-Aminosalicylat Αμινοσαλικυλικό ασβέστιο Calcio aminosalicilato アミノサリチル酸カルシウム Kalsiumaminosalicylat Aminosalicylan wapnia Aminosalicilato de cálcio Aminosalicilat de calciu Аминосалицилат кальция Aminosalicilato de calcio Kalciumaminosalicylat Kalsiyum aminosalisilat Кальцію аміносаліцилат
Capreomycin FALSE TRUE TRUE FALSE 氨水杨酸钙 Kapreomycin Capreomycin Capreomycine Kapreomysiini Capréomycine Capreomycin Καπρεομυκίνη Capreomicina カプレオマイシン Capreomycin Kapreomycyna Capreomicina Capreomicină Капреомицин Capreomicina Kapreomycin Kapreomisin Капреоміцин
Carbenicillin FALSE TRUE TRUE FALSE 羧基青霉素 Karbenicilin Carbenicillin Carbenicilline Karbenisilliini Carbénicilline Carbenicillin Καρβενικιλλίνη Carbenicillina カルベニシリン Karbenicillin Karbenicylina Carbenicilina Carbenicilină Карбенициллин Carbenicilina Karbenicillin Karbenisilin Карбеніцилін
@ -110,14 +111,19 @@ Chloramphenicol FALSE TRUE TRUE FALSE 氯霉素 Chloramfenikol Kloramfenicol Chl
Chlortetracycline FALSE TRUE TRUE FALSE 金霉素 Chlortetracyklin Chlortetracyclin Chloortetracycline Klortetasykliini Chlortétracycline Chlortetracyclin Χλωροτετρακυκλίνη Clorotetraciclina クロルテトラサイクリン Klortetracyklin Chlortetracyklina Chlortetracycline Clortetraciclină Хлортетрациклин Clortetraciclina Klortetracyklin Klortetrasiklin Хлортетрациклін
Cinoxacin FALSE TRUE TRUE FALSE 西诺沙星 Cinoxacin Cinoxacin Cinoxacine Kinoksasiini Cinoxacine Cinoxacin Τσινοξακίνη Cinoxacina シノキサシン Cinoxacin Cinoxacin Cinoxacin Cinoxacină Циноксацин Cinoxacina Cinoxacin Cinoxacin Циноксацин
Ciprofloxacin FALSE TRUE TRUE FALSE 环丙沙星 Ciprofloxacin Ciprofloxacin Ciprofloxacine Siprofloksasiini Ciprofloxacine Ciprofloxacin Σιπροφλοξασίνη Ciprofloxacina シプロフロキサシン Ciprofloxacin Ciprofloksacyna Ciprofloxacin Ciprofloxacină Ципрофлоксацин Ciprofloxacina Ciprofloxacin Siprofloksasin Ципрофлоксацин
Ciprofloxacin/metronidazole FALSE TRUE TRUE FALSE 环丙沙星/甲硝唑 Ciprofloxacin/metronidazol Ciprofloxacin/metronidazol Ciprofloxacine/metronidazol Siprofloksasiini/metronidatsoli Ciprofloxacine/métronidazole Ciprofloxacin/metronidazol Σιπροφλοξασίνη/μετρονιδαζόλη Ciprofloxacina/metronidazolo シプロフロキサシン/メトロニダゾール Ciprofloxacin/metronidazol Ciprofloksacyna/metronidazol Ciprofloxacin/metronidazol Ciprofloxacină/metronidazol Ципрофлоксацин/метронидазол Ciprofloxacina/metronidazol Ciprofloxacin/metronidazol Siprofloksasin/metronidazol Ципрофлоксацин/метронідазол
Ciprofloxacin/ornidazole FALSE TRUE TRUE FALSE 环丙沙星/奥硝唑 Ciprofloxacin/ornidazol Ciprofloxacin/ornidazol Ciprofloxacine/ornidazol Siprofloksasiini/ornidatsoli Ciprofloxacine/ornidazole Ciprofloxacin/ornidazol Σιπροφλοξασίνη/ορνιδαζόλη Ciprofloxacina/ornidazolo シプロフロキサシン/オルニダゾール Ciprofloxacin/ornidazol Ciprofloksacyna/ornidazol Ciprofloxacin/ornidazole Ciprofloxacină/ornidazol Ципрофлоксацин/орнидазол Ciprofloxacina/ornidazol Ciprofloxacin/ornidazol Siprofloksasin/ornidazol Ципрофлоксацин/орнідазол
Ciprofloxacin/tinidazole FALSE TRUE TRUE FALSE 环丙沙星/替尼唑 Ciprofloxacin/tinidazol Ciprofloxacin/tinidazol Ciprofloxacine/tinidazol Siprofloksasiini/tinidatsoli Ciprofloxacine/tinidazole Ciprofloxacin/tinidazol Σιπροφλοξασίνη/τινιδαζόλη Ciprofloxacina/tinidazolo シプロフロキサシン/チニダゾール Ciprofloxacin/tinidazol Ciprofloksacyna/tinidazol Ciprofloxacin/tinidazole Ciprofloxacină/tinidazol Ципрофлоксацин/тинидазол Ciprofloxacina/tinidazol Ciprofloxacin/tinidazol Siprofloksasin/tinidazol Ципрофлоксацин/тинідазол
Clarithromycin FALSE TRUE TRUE FALSE 克拉霉素 Klaritromycin Clarithromycin Claritromycine Klaritromysiini Clarithromycine Clarithromycin Κλαριθρομυκίνη Claritromicina クラリスロマイシン Klaritromycin Klarytromycyna Claritromicina Claritromicină Кларитромицин Claritromicina Claritromycin Klaritromisin Кларитроміцин
Clavulanic acid FALSE TRUE TRUE FALSE 克拉维酸 Kyselina klavulanová Clavulansyre Clavulaanzuur Klavulaanihappo Acide clavulanique Clavulansäure Κλαβουλανικό οξύ Acido clavulanico クラビュラン酸 Klavulansyre Kwas klawulanowy Ácido clavulânico Acid clavulanic Клавулановая кислота Ácido clavulánico Clavulansyra Klavulanik asit Клавуланова кислота
clavulanic acid FALSE TRUE TRUE FALSE 克拉维酸 kyselina klavulanová clavulansyre clavulaanzuur klavulaanihappo acide clavulanique Clavulansäure Κλαβουλανικό οξύ acido clavulanico クラビュラン酸 klavulansyre kwas klawulanowy ácido clavulânico acid clavulanic клавулановая кислота ácido clavulánico clavulansyra klavulanik asit клавуланова кислота
Clindamycin FALSE TRUE TRUE FALSE 克林霉素 Klindamycin Clindamycin Clindamycine Klindamysiini Clindamycine Clindamycin Κλινδαμυκίνη Clindamicina クリンダマイシン Klindamycin Klindamycyna Clindamicina Clindamicină Клиндамицин Clindamicina Clindamycin Klindamisin Кліндаміцин
Clindamycin inducible screening FALSE TRUE TRUE FALSE 克林霉素诱导筛选 Klindamycin induzierbares Screening Clindamycin inducible screening Clindamycine induceerbare screening Klindamysiini indusoitava seulonta Clindamycine dépistage inductible Clindamycin induzierbares Screening Κλινδαμυκίνη επαγόμενο προσυμπτωματικό έλεγχο Clindamicina inducción del cribado クリンダマイシン誘導スクリーニング Klindamycin inducible screening Klindamycyna badanie indukcyjne Clindamicina cribado inducible Clindamicină screening inductibil Клиндамицин индуцируемый скрининг Clindamicina cribado inducible Clindamycin inducible screening Klindamisin indüklenebilir tarama Кліндаміцин індукційний скринінг
Clometocillin FALSE TRUE TRUE FALSE 克罗米修斯( Clometocillin Clometocillin Clometocilline Klometosilliini Clométocilline Clometocillin Κλομετοκιλλίνη Clometocillina クロメトシリン Klometocillin Clometocillin Clometocillin Clometocilină Клометоциллин Clometocilina Klometocillin Clometocillin Клометоцилін
Clotrimazole FALSE TRUE TRUE FALSE 克霉唑 Klotrimazol Clotrimazol Clotrimazol Klotrimatsoli Clotrimazole Clotrimazol Κλοτριμαζόλη Clotrimazolo クロトリマゾール Klotrimazol Klotrimazol Clotrimazole Clotrimazol Клотримазол Clotrimazol Klotrimazol Klotrimazol Клотримазол
Cloxacillin FALSE TRUE TRUE FALSE 克罗西林 Kloxacilin Cloxacillin Cloxacilline Kloksasilliini Cloxacilline Cloxacillin Κλοξακιλλίνη Cloxacillina クロキサシリン Cloxacillin Cloxacillin Cloxacillin Cloxacilină Клоксациллин Cloxacilina Kloxacillin Cloxacillin Клоксацилін
Colistin FALSE TRUE TRUE FALSE 唑啉酮 Kolistin Colistin Colistine Kolistiini Colistine Colistin Κολιστίνη Colistina コリスチン Kolistin Kolistyna Colistin Colistină Колистин Colistina Kolistin Kolistin Колістин
Cycloserine FALSE TRUE TRUE FALSE 环丝氨酸 Cykloserin Cykloserin Cycloserine Sykloserini Cyclosérine Cycloserin Κυκλοσερίνη Cicloserina サイクロセリン Cycloserine Cykloseryna Cicloserina Cicloserină Циклосерин Cicloserina Cycloserine Sikloserin Циклосерин
Dapsone FALSE TRUE TRUE FALSE 多普生 Dapson Dapson Dapson Dapsoni Dapsone Dapson Δαψόνη Dapsone ダプソン Dapsone Dapson Dapsone Dapsone Дапсон Dapsona Dapson Dapson Дапсон
Daptomycin FALSE TRUE TRUE FALSE 达托霉素 Daptomycin Daptomycin Daptomycine Daptomysiini Daptomycine Daptomycin Δαπτομυκίνη Daptomicina ダプトマイシン Daptomycin Daptomycyna Daptomicina Daptomicină Даптомицин Daptomicina Daptomycin Daptomisin Даптоміцин
Dibekacin FALSE TRUE TRUE FALSE 迪贝卡星 Dibekacin Dibekacin Dibekacine Dibekasiini Dibekacine Dibekacin Διβεκακίνη Dibekacin ジベカシン Dibekacin Dibekacin Dibekacin Dibekacin Дибекацин Dibekacina Dibekacin Dibekacin Дібекацин
@ -153,6 +159,7 @@ Kanamycin FALSE TRUE TRUE FALSE 卡那霉素 Kanamycin Kanamycin Kanamycine Kana
Ketoconazole FALSE TRUE TRUE FALSE 酮康唑 Ketokonazol Ketoconazol Ketoconazol Ketokonatsoli Kétoconazole Ketoconazol Κετοκοναζόλη Ketoconazolo ケトコナゾール Ketokonazol Ketokonazol Ketoconazole Ketoconazol Кетоконазол Ketoconazol Ketokonazol Ketokonazol Кетоконазол
Levofloxacin FALSE TRUE TRUE FALSE 氧氟沙星 Levofloxacin Levofloxacin Levofloxacine Levofloksasiini Lévofloxacine Levofloxacin Λεβοφλοξασίνη Levofloxacina レボフロキサシン Levofloxacin Levofloxacin Levofloxacin Levofloxacină Левофлоксацин Levofloxacina Levofloxacin Levofloksasin Левофлоксацин
Lincomycin FALSE TRUE TRUE FALSE 林可霉素 Linkomycin Lincomycin Lincomycine Lincomycin Lincomycine Lincomycin Λινκομυκίνη Lincomicina リンコマイシン Lincomycin Lincomycyna Lincomycin Lincomicină Линкомицин Lincomicina Lincomycin Lincomycin Лінкоміцин
Linezolid FALSE TRUE TRUE FALSE 利奈唑胺 Linezolid Linezolid Linezolid Linezolid Linezolid Linezolid Λινεζολίδη Linezolid リネゾリド Linezolid Linezolid Linezolid Linezolid Линезолид Linezolid Linezolid Linezolid Лінезолід
Lomefloxacin FALSE TRUE TRUE FALSE 洛美沙星 Lomefloxacin Lomefloxacin Lomefloxacine Lomefloksasiini Loméfloxacine Lomefloxacin Λομεφλοξασίνη Lomefloxacina ロメフロキサシン Lomefloksacin Lomefloxacin Lomefloxacin Lomefloxacină Ломефлоксацин Lomefloxacina Lomefloxacin Lomefloksasin Ломефлоксацин
Lysozyme FALSE TRUE TRUE FALSE 硫酸钠 Lysozym Lysozym Lysozym Lysotsyymi Lysozyme Lysozym Λυσοζύμη Lisozima リゾチーム Lysozym Lizozym Lysozyme Lizozimă Лизоцим Lisozima Lysozym Lizozim Лізоцим
Mandelic acid FALSE TRUE TRUE FALSE 扁桃酸 Kyselina mandlová Mandelinsyre Amandelzuur Mandelihappo Acide mandélique Mandelsäure Μανδελικό οξύ Acido mandelico マンデル酸 Mandelsyre Kwas migdałowy Ácido mandélico Acid mandelic Мандаловая кислота Ácido mandélico Mandelsyra Mandelik asit Мигдалева кислота
@ -243,12 +250,14 @@ Sulfathiazole FALSE TRUE TRUE FALSE 磺胺噻唑 Sulfathiazol Sulfathiazol Sulfa
Sulfathiourea FALSE TRUE TRUE FALSE 磺胺硫脲 Sulfathiomočovina Sulfathiourea Sulfathioureum Sulfathiourea Sulfathiourée Sulfathioharnstoff Σουλφαθειουρία Sulfathiourea スルファチオ尿素 Sulfathiourea Sulfathiourea Sulfathiourea Sulfathiourea Сульфатиомочевина Sulfathiourea Sulfatiourea Sulfathiourea Сульфатіосечовина
Sultamicillin FALSE TRUE TRUE FALSE 苏打米林 Sultamicilin Sultamicillin Sultamicilline Sultamisilliini Sultamicilline Sultamicillin Σουλταμικιλλίνη Sultamicillina スルタミシリン Sultamicillin Sultamicillin Sultamicillin Sultamicilină Сультамициллин Sultamicilina Sultamicillin Sultamicillin Сультаміцилін
Talampicillin FALSE TRUE TRUE FALSE 塔拉比西林 Talampicilin Talampicillin Talampicilline Talampisilliini Talampicilline Talampicillin Ταλαμπικιλλίνη Talampicillina タランピシリン Talampicillin Talampicylina Talampicilina Talampicilină Талампициллин Talampicilina Talampicillin Talampisilin Талампіцилін
Tedizolid FALSE TRUE TRUE FALSE 特地唑胺 Tedizolid Tedizolid Tedizolid Tedizolid Tedizolid Tedizolid Τεντιζολίδη Tedizolid テジゾリド Tedizolid Tedizolid Tedizolid Tedizolid Тедизолид Tedizolid Tedizolid Tedizolid Тедізолід
Teicoplanin FALSE TRUE TRUE FALSE 泰科普兰素 Teicoplanin Teicoplanin Teicoplanine Teikoplaniini Teicoplanine Teicoplanin Τεϊκοπλανίνη Teicoplanina テイコプラニン Teicoplanin Teicoplanin Teicoplanin Teicoplanin Тейкопланин Teicoplanina Teicoplanin Teikoplanin Тейкопланін
Telithromycin FALSE TRUE TRUE FALSE 泰利霉素 Telithromycin Telithromycin Telitromycine Telitromysiini Télithromycine Telithromycin Τελιθρομυκίνη Telitromicina テリスロマイシン Telitromycin Telitromycyna Telitromicina Telitromicină Телитромицин Telitromicina Telitromycin Telitromisin Телітроміцин
Temafloxacin FALSE TRUE TRUE FALSE 氨甲环酸 Temafloxacin Temafloxacin Temafloxacine Temafloksasiini Temafloxacine Temafloxacin Τεμαφλοξασίνη Temafloxacina テマフロキサシン Temafloxacin Temafloksacyna Temafloxacin Temafloxacin Темафлоксацин Temafloxacina Temafloxacin Temafloksasin Темафлоксацин
Temocillin FALSE TRUE TRUE FALSE 氨甲蝶呤 Temocillin Temocillin Temocilline Temosilliini Temocillin Temocillin Τεμοκιλλίνη Temocillina テモシリン Temocillin Temocillin Temocillin Temocilină Темоциллин Temocilina Temocillin Temocillin Темоцилін
Tenofovir disoproxil FALSE TRUE TRUE FALSE 特诺福韦酯 Tenofovir disoproxil Tenofovir disoproxil Tenofovir Tenofoviiridisoproksiili Tenofovir disoproxil Tenofovir Disoproxil Τενοφοβίρη δισοπροξίλη Tenofovir disoproxil テノホビルジソプロキシル Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproxil Тенофовир дизопроксил Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproksil Тенофовір дизопроксил
Terizidone FALSE TRUE TRUE FALSE 特立兹酮 Terizidon Terizidon Terizidon Teritsidoni Terizidone Terizidon Τεριζιδόνη Terizidone テリジドン Terizidon Terizidon Terizidone Terizidonă Теризидон Terizidona Terizidon Terizidon Теризидон
Thiacetazone FALSE TRUE TRUE FALSE 噻乙唑酮 Thiacetazon Thiacetazon Thiacetazone Thiacetazoni Thiacétazone Thiacetazon Θιακεταζόνη Thiacetazona チアセタゾン Thiacetazone Thiacetazon Thiacetazona Thiacetazonă Тиазетазон Thiacetazona Thiacetazone Thiasetazon Тіацетазон
Thiamphenicol FALSE TRUE TRUE FALSE 硫苯尼考 Thiamfenikol Thiamphenicol Thiamfenicol Tiamfenikoli Thiamphénicol Thiamphenicol Θειαμφενικόλη Tiamfenicolo チアンフェニコール Tiamfenikol Tiamfenikol Tiamfenicol Tiamfenicol Тиамфеникол Tiamfenicol Tiamfenikol Thiamphenicol Тіамфенікол
Thioacetazone/isoniazid FALSE TRUE TRUE FALSE 硫乙酰唑酮/异烟肼 Thioacetazon/isoniazid Thioacetazon/isoniazid Thioacetazon/isoniazide Tioasetatsoni/isonatsidi Thioacétazone/isoniazide Thioacetazon/Isoniazid Θειοακεταζόνη/ισονιαζίδη Tioacetazone/isoniazide チオアセタゾン/イソニアジド Thioacetazon/isoniazid Tioacetazon/izoniazyd Thioacetazone/isoniazid Tioacetazonă/isoniazidă Тиоацетазон/изониазид Tioacetazona/isoniazida Thioacetazon/isoniazid Tiyoasetazon/izoniazid Тіоацетазон/ізоніазид
Ticarcillin FALSE TRUE TRUE FALSE 替卡西林 Tykarcilinu Ticarcillin Ticarcilline Ticarcillin Ticarcilline Ticarcillin Τικαρκιλλίνη Ticarcillina チカルシリン Ticarcillin Ticarcillin Ticarcilina Ticarcilină Тикарциллин Ticarcilina Ticarcillin Ticarcillin Тикарцилін

1 pattern regular_expr case_sensitive affect_ab_name affect_mo_name zh cs da nl fi fr de el it ja no pl pt ro ru es sv tr uk
73 Benzathine benzylpenicillin FALSE TRUE TRUE FALSE 苄丝肼青霉素 Benzathine benzylpenicillin Benzathinbenzylpenicillin Benzylpenicillinebenzathine Bentsatiinibentsyylipenisilliini Benzathine benzylpénicilline Benzathin-Benzylpenicillin Βενζαθίνη βενζυλπενικιλλίνη Benzatina benzilpenicillina ベンズシン・ベンジルペニシリン Benzathine benzylpenicillin Benzylpenicylina benzylowa Benzatina benzatina benzilpenicilina Benzatină benzilpenicilină Бензатин бензилпенициллин Bencilpenicilina benzatínica Benzathinbenzylpenicillin Benzatin benzilpenisilin Бензатину бензилпеніцилін
74 Benzathine phenoxymethylpenicillin FALSE TRUE TRUE FALSE 苄星苯氧甲基青霉素 Benzatinový fenoxymethylpenicilin Benzathinfenoxymethylpenicillin Fenoxymethylpenicillinebenzathine Bentsatiinifenoksimetyylipenisilliini Phénoxyméthylpénicilline benzathine Benzathin-Phenoxymethylpenicillin Βενζαθίνη φαινοξυμεθυλοπενικιλλίνη Benzatina fenossimetilpenicillina ベンザチンフェノキシメチルペニシリン Benzathine fenoksymetylpenicillin Fenoksymetylopenicylina benzylowa Benzatina fenoximetilpenicilina Benzatină fenoximetilpenicilină Бензатин феноксиметилпенициллин Fenoximetilpenicilina benzatínica Bensathinfenoximetylpenicillin Benzatin fenoksimetilpenisilin Бензатину феноксиметилпеніцилін
75 Benzylpenicillin FALSE TRUE TRUE FALSE 苄基青霉素 Benzylpenicilin Benzylpenicillin Benzylpenicilline Bentsyylipenisilliini Benzylpénicilline Benzylpenicillin Βενζυλοπενικιλλίνη Benzilpenicillina ベンジルペニシリン Benzylpenicillin Benzylpenicylina Benzilpenicilina Benzilpenicilină Бензилпенициллин Bencilpenicilina Bensylpenicillin Benzilpenisilin Бензилпеніцилін
76 Cadazolid FALSE TRUE TRUE FALSE 卡达唑利德 Kadazolid Cadazolid Cadazolid Kadazolid Cadazolid Cadazolid Καδαζολίδη Cadazolid カダゾリド Cadazolid Kadazolid Cadazolid Cadazolid Кадазолид Cadazolid Cadazolid Cadazolid Кадазолід
77 Calcium aminosalicylate FALSE TRUE TRUE FALSE 氨基水杨酸钙 Aminosalicylát vápenatý Calciumaminosalicylat Aminosalicylzuur Kalsiumaminosalisylaatti Aminosalicylate de calcium Kalzium-Aminosalicylat Αμινοσαλικυλικό ασβέστιο Calcio aminosalicilato アミノサリチル酸カルシウム Kalsiumaminosalicylat Aminosalicylan wapnia Aminosalicilato de cálcio Aminosalicilat de calciu Аминосалицилат кальция Aminosalicilato de calcio Kalciumaminosalicylat Kalsiyum aminosalisilat Кальцію аміносаліцилат
78 Capreomycin FALSE TRUE TRUE FALSE 氨水杨酸钙 Kapreomycin Capreomycin Capreomycine Kapreomysiini Capréomycine Capreomycin Καπρεομυκίνη Capreomicina カプレオマイシン Capreomycin Kapreomycyna Capreomicina Capreomicină Капреомицин Capreomicina Kapreomycin Kapreomisin Капреоміцин
79 Carbenicillin FALSE TRUE TRUE FALSE 羧基青霉素 Karbenicilin Carbenicillin Carbenicilline Karbenisilliini Carbénicilline Carbenicillin Καρβενικιλλίνη Carbenicillina カルベニシリン Karbenicillin Karbenicylina Carbenicilina Carbenicilină Карбенициллин Carbenicilina Karbenicillin Karbenisilin Карбеніцилін
111 Chlortetracycline FALSE TRUE TRUE FALSE 金霉素 Chlortetracyklin Chlortetracyclin Chloortetracycline Klortetasykliini Chlortétracycline Chlortetracyclin Χλωροτετρακυκλίνη Clorotetraciclina クロルテトラサイクリン Klortetracyklin Chlortetracyklina Chlortetracycline Clortetraciclină Хлортетрациклин Clortetraciclina Klortetracyklin Klortetrasiklin Хлортетрациклін
112 Cinoxacin FALSE TRUE TRUE FALSE 西诺沙星 Cinoxacin Cinoxacin Cinoxacine Kinoksasiini Cinoxacine Cinoxacin Τσινοξακίνη Cinoxacina シノキサシン Cinoxacin Cinoxacin Cinoxacin Cinoxacină Циноксацин Cinoxacina Cinoxacin Cinoxacin Циноксацин
113 Ciprofloxacin FALSE TRUE TRUE FALSE 环丙沙星 Ciprofloxacin Ciprofloxacin Ciprofloxacine Siprofloksasiini Ciprofloxacine Ciprofloxacin Σιπροφλοξασίνη Ciprofloxacina シプロフロキサシン Ciprofloxacin Ciprofloksacyna Ciprofloxacin Ciprofloxacină Ципрофлоксацин Ciprofloxacina Ciprofloxacin Siprofloksasin Ципрофлоксацин
114 Ciprofloxacin/metronidazole FALSE TRUE TRUE FALSE 环丙沙星/甲硝唑 Ciprofloxacin/metronidazol Ciprofloxacin/metronidazol Ciprofloxacine/metronidazol Siprofloksasiini/metronidatsoli Ciprofloxacine/métronidazole Ciprofloxacin/metronidazol Σιπροφλοξασίνη/μετρονιδαζόλη Ciprofloxacina/metronidazolo シプロフロキサシン/メトロニダゾール Ciprofloxacin/metronidazol Ciprofloksacyna/metronidazol Ciprofloxacin/metronidazol Ciprofloxacină/metronidazol Ципрофлоксацин/метронидазол Ciprofloxacina/metronidazol Ciprofloxacin/metronidazol Siprofloksasin/metronidazol Ципрофлоксацин/метронідазол
115 Ciprofloxacin/ornidazole FALSE TRUE TRUE FALSE 环丙沙星/奥硝唑 Ciprofloxacin/ornidazol Ciprofloxacin/ornidazol Ciprofloxacine/ornidazol Siprofloksasiini/ornidatsoli Ciprofloxacine/ornidazole Ciprofloxacin/ornidazol Σιπροφλοξασίνη/ορνιδαζόλη Ciprofloxacina/ornidazolo シプロフロキサシン/オルニダゾール Ciprofloxacin/ornidazol Ciprofloksacyna/ornidazol Ciprofloxacin/ornidazole Ciprofloxacină/ornidazol Ципрофлоксацин/орнидазол Ciprofloxacina/ornidazol Ciprofloxacin/ornidazol Siprofloksasin/ornidazol Ципрофлоксацин/орнідазол
116 Ciprofloxacin/tinidazole FALSE TRUE TRUE FALSE 环丙沙星/替尼唑 Ciprofloxacin/tinidazol Ciprofloxacin/tinidazol Ciprofloxacine/tinidazol Siprofloksasiini/tinidatsoli Ciprofloxacine/tinidazole Ciprofloxacin/tinidazol Σιπροφλοξασίνη/τινιδαζόλη Ciprofloxacina/tinidazolo シプロフロキサシン/チニダゾール Ciprofloxacin/tinidazol Ciprofloksacyna/tinidazol Ciprofloxacin/tinidazole Ciprofloxacină/tinidazol Ципрофлоксацин/тинидазол Ciprofloxacina/tinidazol Ciprofloxacin/tinidazol Siprofloksasin/tinidazol Ципрофлоксацин/тинідазол
117 Clarithromycin FALSE TRUE TRUE FALSE 克拉霉素 Klaritromycin Clarithromycin Claritromycine Klaritromysiini Clarithromycine Clarithromycin Κλαριθρομυκίνη Claritromicina クラリスロマイシン Klaritromycin Klarytromycyna Claritromicina Claritromicină Кларитромицин Claritromicina Claritromycin Klaritromisin Кларитроміцин
118 Clavulanic acid FALSE TRUE TRUE FALSE 克拉维酸 Kyselina klavulanová Clavulansyre Clavulaanzuur Klavulaanihappo Acide clavulanique Clavulansäure Κλαβουλανικό οξύ Acido clavulanico クラビュラン酸 Klavulansyre Kwas klawulanowy Ácido clavulânico Acid clavulanic Клавулановая кислота Ácido clavulánico Clavulansyra Klavulanik asit Клавуланова кислота
119 clavulanic acid FALSE TRUE TRUE FALSE 克拉维酸 kyselina klavulanová clavulansyre clavulaanzuur klavulaanihappo acide clavulanique Clavulansäure Κλαβουλανικό οξύ acido clavulanico クラビュラン酸 klavulansyre kwas klawulanowy ácido clavulânico acid clavulanic клавулановая кислота ácido clavulánico clavulansyra klavulanik asit клавуланова кислота
120 Clindamycin FALSE TRUE TRUE FALSE 克林霉素 Klindamycin Clindamycin Clindamycine Klindamysiini Clindamycine Clindamycin Κλινδαμυκίνη Clindamicina クリンダマイシン Klindamycin Klindamycyna Clindamicina Clindamicină Клиндамицин Clindamicina Clindamycin Klindamisin Кліндаміцин
121 Clindamycin inducible screening FALSE TRUE TRUE FALSE 克林霉素诱导筛选 Klindamycin induzierbares Screening Clindamycin inducible screening Clindamycine induceerbare screening Klindamysiini indusoitava seulonta Clindamycine dépistage inductible Clindamycin induzierbares Screening Κλινδαμυκίνη επαγόμενο προσυμπτωματικό έλεγχο Clindamicina inducción del cribado クリンダマイシン誘導スクリーニング Klindamycin inducible screening Klindamycyna badanie indukcyjne Clindamicina cribado inducible Clindamicină screening inductibil Клиндамицин индуцируемый скрининг Clindamicina cribado inducible Clindamycin inducible screening Klindamisin indüklenebilir tarama Кліндаміцин індукційний скринінг
122 Clometocillin FALSE TRUE TRUE FALSE 克罗米修斯( Clometocillin Clometocillin Clometocilline Klometosilliini Clométocilline Clometocillin Κλομετοκιλλίνη Clometocillina クロメトシリン Klometocillin Clometocillin Clometocillin Clometocilină Клометоциллин Clometocilina Klometocillin Clometocillin Клометоцилін
123 Clotrimazole FALSE TRUE TRUE FALSE 克霉唑 Klotrimazol Clotrimazol Clotrimazol Klotrimatsoli Clotrimazole Clotrimazol Κλοτριμαζόλη Clotrimazolo クロトリマゾール Klotrimazol Klotrimazol Clotrimazole Clotrimazol Клотримазол Clotrimazol Klotrimazol Klotrimazol Клотримазол
124 Cloxacillin FALSE TRUE TRUE FALSE 克罗西林 Kloxacilin Cloxacillin Cloxacilline Kloksasilliini Cloxacilline Cloxacillin Κλοξακιλλίνη Cloxacillina クロキサシリン Cloxacillin Cloxacillin Cloxacillin Cloxacilină Клоксациллин Cloxacilina Kloxacillin Cloxacillin Клоксацилін
125 Colistin FALSE TRUE TRUE FALSE 唑啉酮 Kolistin Colistin Colistine Kolistiini Colistine Colistin Κολιστίνη Colistina コリスチン Kolistin Kolistyna Colistin Colistină Колистин Colistina Kolistin Kolistin Колістин
126 Cycloserine FALSE TRUE TRUE FALSE 环丝氨酸 Cykloserin Cykloserin Cycloserine Sykloserini Cyclosérine Cycloserin Κυκλοσερίνη Cicloserina サイクロセリン Cycloserine Cykloseryna Cicloserina Cicloserină Циклосерин Cicloserina Cycloserine Sikloserin Циклосерин
127 Dapsone FALSE TRUE TRUE FALSE 多普生 Dapson Dapson Dapson Dapsoni Dapsone Dapson Δαψόνη Dapsone ダプソン Dapsone Dapson Dapsone Dapsone Дапсон Dapsona Dapson Dapson Дапсон
128 Daptomycin FALSE TRUE TRUE FALSE 达托霉素 Daptomycin Daptomycin Daptomycine Daptomysiini Daptomycine Daptomycin Δαπτομυκίνη Daptomicina ダプトマイシン Daptomycin Daptomycyna Daptomicina Daptomicină Даптомицин Daptomicina Daptomycin Daptomisin Даптоміцин
129 Dibekacin FALSE TRUE TRUE FALSE 迪贝卡星 Dibekacin Dibekacin Dibekacine Dibekasiini Dibekacine Dibekacin Διβεκακίνη Dibekacin ジベカシン Dibekacin Dibekacin Dibekacin Dibekacin Дибекацин Dibekacina Dibekacin Dibekacin Дібекацин
159 Ketoconazole FALSE TRUE TRUE FALSE 酮康唑 Ketokonazol Ketoconazol Ketoconazol Ketokonatsoli Kétoconazole Ketoconazol Κετοκοναζόλη Ketoconazolo ケトコナゾール Ketokonazol Ketokonazol Ketoconazole Ketoconazol Кетоконазол Ketoconazol Ketokonazol Ketokonazol Кетоконазол
160 Levofloxacin FALSE TRUE TRUE FALSE 氧氟沙星 Levofloxacin Levofloxacin Levofloxacine Levofloksasiini Lévofloxacine Levofloxacin Λεβοφλοξασίνη Levofloxacina レボフロキサシン Levofloxacin Levofloxacin Levofloxacin Levofloxacină Левофлоксацин Levofloxacina Levofloxacin Levofloksasin Левофлоксацин
161 Lincomycin FALSE TRUE TRUE FALSE 林可霉素 Linkomycin Lincomycin Lincomycine Lincomycin Lincomycine Lincomycin Λινκομυκίνη Lincomicina リンコマイシン Lincomycin Lincomycyna Lincomycin Lincomicină Линкомицин Lincomicina Lincomycin Lincomycin Лінкоміцин
162 Linezolid FALSE TRUE TRUE FALSE 利奈唑胺 Linezolid Linezolid Linezolid Linezolid Linezolid Linezolid Λινεζολίδη Linezolid リネゾリド Linezolid Linezolid Linezolid Linezolid Линезолид Linezolid Linezolid Linezolid Лінезолід
163 Lomefloxacin FALSE TRUE TRUE FALSE 洛美沙星 Lomefloxacin Lomefloxacin Lomefloxacine Lomefloksasiini Loméfloxacine Lomefloxacin Λομεφλοξασίνη Lomefloxacina ロメフロキサシン Lomefloksacin Lomefloxacin Lomefloxacin Lomefloxacină Ломефлоксацин Lomefloxacina Lomefloxacin Lomefloksasin Ломефлоксацин
164 Lysozyme FALSE TRUE TRUE FALSE 硫酸钠 Lysozym Lysozym Lysozym Lysotsyymi Lysozyme Lysozym Λυσοζύμη Lisozima リゾチーム Lysozym Lizozym Lysozyme Lizozimă Лизоцим Lisozima Lysozym Lizozim Лізоцим
165 Mandelic acid FALSE TRUE TRUE FALSE 扁桃酸 Kyselina mandlová Mandelinsyre Amandelzuur Mandelihappo Acide mandélique Mandelsäure Μανδελικό οξύ Acido mandelico マンデル酸 Mandelsyre Kwas migdałowy Ácido mandélico Acid mandelic Мандаловая кислота Ácido mandélico Mandelsyra Mandelik asit Мигдалева кислота
250 Sulfathiourea FALSE TRUE TRUE FALSE 磺胺硫脲 Sulfathiomočovina Sulfathiourea Sulfathioureum Sulfathiourea Sulfathiourée Sulfathioharnstoff Σουλφαθειουρία Sulfathiourea スルファチオ尿素 Sulfathiourea Sulfathiourea Sulfathiourea Sulfathiourea Сульфатиомочевина Sulfathiourea Sulfatiourea Sulfathiourea Сульфатіосечовина
251 Sultamicillin FALSE TRUE TRUE FALSE 苏打米林 Sultamicilin Sultamicillin Sultamicilline Sultamisilliini Sultamicilline Sultamicillin Σουλταμικιλλίνη Sultamicillina スルタミシリン Sultamicillin Sultamicillin Sultamicillin Sultamicilină Сультамициллин Sultamicilina Sultamicillin Sultamicillin Сультаміцилін
252 Talampicillin FALSE TRUE TRUE FALSE 塔拉比西林 Talampicilin Talampicillin Talampicilline Talampisilliini Talampicilline Talampicillin Ταλαμπικιλλίνη Talampicillina タランピシリン Talampicillin Talampicylina Talampicilina Talampicilină Талампициллин Talampicilina Talampicillin Talampisilin Талампіцилін
253 Tedizolid FALSE TRUE TRUE FALSE 特地唑胺 Tedizolid Tedizolid Tedizolid Tedizolid Tedizolid Tedizolid Τεντιζολίδη Tedizolid テジゾリド Tedizolid Tedizolid Tedizolid Tedizolid Тедизолид Tedizolid Tedizolid Tedizolid Тедізолід
254 Teicoplanin FALSE TRUE TRUE FALSE 泰科普兰素 Teicoplanin Teicoplanin Teicoplanine Teikoplaniini Teicoplanine Teicoplanin Τεϊκοπλανίνη Teicoplanina テイコプラニン Teicoplanin Teicoplanin Teicoplanin Teicoplanin Тейкопланин Teicoplanina Teicoplanin Teikoplanin Тейкопланін
255 Telithromycin FALSE TRUE TRUE FALSE 泰利霉素 Telithromycin Telithromycin Telitromycine Telitromysiini Télithromycine Telithromycin Τελιθρομυκίνη Telitromicina テリスロマイシン Telitromycin Telitromycyna Telitromicina Telitromicină Телитромицин Telitromicina Telitromycin Telitromisin Телітроміцин
256 Temafloxacin FALSE TRUE TRUE FALSE 氨甲环酸 Temafloxacin Temafloxacin Temafloxacine Temafloksasiini Temafloxacine Temafloxacin Τεμαφλοξασίνη Temafloxacina テマフロキサシン Temafloxacin Temafloksacyna Temafloxacin Temafloxacin Темафлоксацин Temafloxacina Temafloxacin Temafloksasin Темафлоксацин
257 Temocillin FALSE TRUE TRUE FALSE 氨甲蝶呤 Temocillin Temocillin Temocilline Temosilliini Temocillin Temocillin Τεμοκιλλίνη Temocillina テモシリン Temocillin Temocillin Temocillin Temocilină Темоциллин Temocilina Temocillin Temocillin Темоцилін
258 Tenofovir disoproxil FALSE TRUE TRUE FALSE 特诺福韦酯 Tenofovir disoproxil Tenofovir disoproxil Tenofovir Tenofoviiridisoproksiili Tenofovir disoproxil Tenofovir Disoproxil Τενοφοβίρη δισοπροξίλη Tenofovir disoproxil テノホビルジソプロキシル Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproxil Тенофовир дизопроксил Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproksil Тенофовір дизопроксил
259 Terizidone FALSE TRUE TRUE FALSE 特立兹酮 Terizidon Terizidon Terizidon Teritsidoni Terizidone Terizidon Τεριζιδόνη Terizidone テリジドン Terizidon Terizidon Terizidone Terizidonă Теризидон Terizidona Terizidon Terizidon Теризидон
260 Thiacetazone FALSE TRUE TRUE FALSE 噻乙唑酮 Thiacetazon Thiacetazon Thiacetazone Thiacetazoni Thiacétazone Thiacetazon Θιακεταζόνη Thiacetazona チアセタゾン Thiacetazone Thiacetazon Thiacetazona Thiacetazonă Тиазетазон Thiacetazona Thiacetazone Thiasetazon Тіацетазон
261 Thiamphenicol FALSE TRUE TRUE FALSE 硫苯尼考 Thiamfenikol Thiamphenicol Thiamfenicol Tiamfenikoli Thiamphénicol Thiamphenicol Θειαμφενικόλη Tiamfenicolo チアンフェニコール Tiamfenikol Tiamfenikol Tiamfenicol Tiamfenicol Тиамфеникол Tiamfenicol Tiamfenikol Thiamphenicol Тіамфенікол
262 Thioacetazone/isoniazid FALSE TRUE TRUE FALSE 硫乙酰唑酮/异烟肼 Thioacetazon/isoniazid Thioacetazon/isoniazid Thioacetazon/isoniazide Tioasetatsoni/isonatsidi Thioacétazone/isoniazide Thioacetazon/Isoniazid Θειοακεταζόνη/ισονιαζίδη Tioacetazone/isoniazide チオアセタゾン/イソニアジド Thioacetazon/isoniazid Tioacetazon/izoniazyd Thioacetazone/isoniazid Tioacetazonă/isoniazidă Тиоацетазон/изониазид Tioacetazona/isoniazida Thioacetazon/isoniazid Tiyoasetazon/izoniazid Тіоацетазон/ізоніазид
263 Ticarcillin FALSE TRUE TRUE FALSE 替卡西林 Tykarcilinu Ticarcillin Ticarcilline Ticarcillin Ticarcilline Ticarcillin Τικαρκιλλίνη Ticarcillina チカルシリン Ticarcillin Ticarcillin Ticarcilina Ticarcilină Тикарциллин Ticarcilina Ticarcillin Ticarcillin Тикарцилін

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@ -21,11 +21,13 @@
\alias{lincosamides}
\alias{lipoglycopeptides}
\alias{macrolides}
\alias{nitrofurans}
\alias{oxazolidinones}
\alias{penicillins}
\alias{polymyxins}
\alias{streptogramins}
\alias{quinolones}
\alias{rifamycins}
\alias{streptogramins}
\alias{tetracyclines}
\alias{trimethoprims}
\alias{ureidopenicillins}
@ -66,22 +68,26 @@ fluoroquinolones(only_sir_columns = FALSE, ...)
glycopeptides(only_sir_columns = FALSE, ...)
lincosamides(only_sir_columns = FALSE, ...)
lincosamides(only_sir_columns = FALSE, only_treatable = TRUE, ...)
lipoglycopeptides(only_sir_columns = FALSE, ...)
macrolides(only_sir_columns = FALSE, ...)
nitrofurans(only_sir_columns = FALSE, ...)
oxazolidinones(only_sir_columns = FALSE, ...)
penicillins(only_sir_columns = FALSE, ...)
polymyxins(only_sir_columns = FALSE, only_treatable = TRUE, ...)
streptogramins(only_sir_columns = FALSE, ...)
quinolones(only_sir_columns = FALSE, ...)
rifamycins(only_sir_columns = FALSE, ...)
streptogramins(only_sir_columns = FALSE, ...)
tetracyclines(only_sir_columns = FALSE, ...)
trimethoprims(only_sir_columns = FALSE, ...)
@ -152,13 +158,15 @@ The \code{\link[=not_intrinsic_resistant]{not_intrinsic_resistant()}} function c
\item \code{\link[=cephalosporins_5th]{cephalosporins_5th()}} can select: \cr ceftaroline (CPT), ceftaroline/avibactam (CPA), ceftobiprole (BPR), ceftobiprole medocaril (CFM1), and ceftolozane/tazobactam (CZT)
\item \code{\link[=fluoroquinolones]{fluoroquinolones()}} can select: \cr besifloxacin (BES), ciprofloxacin (CIP), clinafloxacin (CLX), danofloxacin (DAN), delafloxacin (DFX), difloxacin (DIF), enoxacin (ENX), enrofloxacin (ENR), finafloxacin (FIN), fleroxacin (FLE), garenoxacin (GRN), gatifloxacin (GAT), gemifloxacin (GEM), grepafloxacin (GRX), lascufloxacin (LSC), levofloxacin (LVX), levonadifloxacin (LND), lomefloxacin (LOM), marbofloxacin (MAR), metioxate (MXT), miloxacin (MIL), moxifloxacin (MFX), nadifloxacin (NAD), nifuroquine (NIF), norfloxacin (NOR), ofloxacin (OFX), orbifloxacin (ORB), pazufloxacin (PAZ), pefloxacin (PEF), pradofloxacin (PRA), premafloxacin (PRX), prulifloxacin (PRU), rufloxacin (RFL), sarafloxacin (SAR), sitafloxacin (SIT), sparfloxacin (SPX), temafloxacin (TMX), tilbroquinol (TBQ), tioxacin (TXC), tosufloxacin (TFX), and trovafloxacin (TVA)
\item \code{\link[=glycopeptides]{glycopeptides()}} can select: \cr avoparcin (AVO), dalbavancin (DAL), norvancomycin (NVA), oritavancin (ORI), ramoplanin (RAM), teicoplanin (TEC), teicoplanin-macromethod (TCM), telavancin (TLV), vancomycin (VAN), and vancomycin-macromethod (VAM)
\item \code{\link[=lincosamides]{lincosamides()}} can select: \cr acetylmidecamycin (ACM), acetylspiramycin (ASP), clindamycin (CLI), gamithromycin (GAM), kitasamycin (KIT), lincomycin (LIN), meleumycin (MEL), nafithromycin (ZWK), pirlimycin (PRL), primycin (PRM), solithromycin (SOL), tildipirosin (TIP), tilmicosin (TIL), tulathromycin (TUL), tylosin (TYL), and tylvalosin (TYL1)
\item \code{\link[=lincosamides]{lincosamides()}} can select: \cr acetylmidecamycin (ACM), acetylspiramycin (ASP), clindamycin (CLI), clindamycin inducible screening (CLI1), gamithromycin (GAM), kitasamycin (KIT), lincomycin (LIN), meleumycin (MEL), nafithromycin (ZWK), pirlimycin (PRL), primycin (PRM), solithromycin (SOL), tildipirosin (TIP), tilmicosin (TIL), tulathromycin (TUL), tylosin (TYL), and tylvalosin (TYL1)
\item \code{\link[=lipoglycopeptides]{lipoglycopeptides()}} can select: \cr dalbavancin (DAL), oritavancin (ORI), and telavancin (TLV)
\item \code{\link[=macrolides]{macrolides()}} can select: \cr acetylmidecamycin (ACM), acetylspiramycin (ASP), azithromycin (AZM), clarithromycin (CLR), dirithromycin (DIR), erythromycin (ERY), flurithromycin (FLR1), gamithromycin (GAM), josamycin (JOS), kitasamycin (KIT), meleumycin (MEL), midecamycin (MID), miocamycin (MCM), nafithromycin (ZWK), oleandomycin (OLE), pirlimycin (PRL), primycin (PRM), rokitamycin (ROK), roxithromycin (RXT), solithromycin (SOL), spiramycin (SPI), telithromycin (TLT), tildipirosin (TIP), tilmicosin (TIL), troleandomycin (TRL), tulathromycin (TUL), tylosin (TYL), and tylvalosin (TYL1)
\item \code{\link[=nitrofurans]{nitrofurans()}} can select: \cr furazidin (FUR), furazolidone (FRZ), nifurtoinol (NFR), nitrofurantoin (NIT), and nitrofurazone (NIZ)
\item \code{\link[=oxazolidinones]{oxazolidinones()}} can select: \cr cadazolid (CDZ), cycloserine (CYC), linezolid (LNZ), tedizolid (TZD), and thiacetazone (THA)
\item \code{\link[=penicillins]{penicillins()}} can select: \cr amoxicillin (AMX), amoxicillin/clavulanic acid (AMC), amoxicillin/sulbactam (AXS), ampicillin (AMP), ampicillin/sulbactam (SAM), apalcillin (APL), aspoxicillin (APX), avibactam (AVB), azidocillin (AZD), azlocillin (AZL), aztreonam (ATM), aztreonam/avibactam (AZA), aztreonam/nacubactam (ANC), bacampicillin (BAM), benzathine benzylpenicillin (BNB), benzathine phenoxymethylpenicillin (BNP), benzylpenicillin (PEN), carbenicillin (CRB), carindacillin (CRN), cefepime/nacubactam (FNC), ciclacillin (CIC), clometocillin (CLM), cloxacillin (CLO), dicloxacillin (DIC), epicillin (EPC), flucloxacillin (FLC), hetacillin (HET), lenampicillin (LEN), mecillinam (MEC), metampicillin (MTM), meticillin (MET), mezlocillin (MEZ), mezlocillin/sulbactam (MSU), nacubactam (NAC), nafcillin (NAF), oxacillin (OXA), penamecillin (PNM), penicillin/novobiocin (PNO), penicillin/sulbactam (PSU), pheneticillin (PHE), phenoxymethylpenicillin (PHN), piperacillin (PIP), piperacillin/sulbactam (PIS), piperacillin/tazobactam (TZP), piridicillin (PRC), pivampicillin (PVM), pivmecillinam (PME), procaine benzylpenicillin (PRB), propicillin (PRP), sarmoxicillin (SRX), sulbactam (SUL), sulbenicillin (SBC), sultamicillin (SLT6), talampicillin (TAL), tazobactam (TAZ), temocillin (TEM), ticarcillin (TIC), and ticarcillin/clavulanic acid (TCC)
\item \code{\link[=polymyxins]{polymyxins()}} can select: \cr colistin (COL), polymyxin B (PLB), and polymyxin B/polysorbate 80 (POP)
\item \code{\link[=quinolones]{quinolones()}} can select: \cr besifloxacin (BES), cinoxacin (CIN), ciprofloxacin (CIP), clinafloxacin (CLX), danofloxacin (DAN), delafloxacin (DFX), difloxacin (DIF), enoxacin (ENX), enrofloxacin (ENR), finafloxacin (FIN), fleroxacin (FLE), flumequine (FLM), garenoxacin (GRN), gatifloxacin (GAT), gemifloxacin (GEM), grepafloxacin (GRX), lascufloxacin (LSC), levofloxacin (LVX), levonadifloxacin (LND), lomefloxacin (LOM), marbofloxacin (MAR), metioxate (MXT), miloxacin (MIL), moxifloxacin (MFX), nadifloxacin (NAD), nalidixic acid (NAL), nemonoxacin (NEM), nifuroquine (NIF), nitroxoline (NTR), norfloxacin (NOR), ofloxacin (OFX), orbifloxacin (ORB), oxolinic acid (OXO), pazufloxacin (PAZ), pefloxacin (PEF), pipemidic acid (PPA), piromidic acid (PIR), pradofloxacin (PRA), premafloxacin (PRX), prulifloxacin (PRU), rosoxacin (ROS), rufloxacin (RFL), sarafloxacin (SAR), sitafloxacin (SIT), sparfloxacin (SPX), temafloxacin (TMX), tilbroquinol (TBQ), tioxacin (TXC), tosufloxacin (TFX), and trovafloxacin (TVA)
\item \code{\link[=quinolones]{quinolones()}} can select: \cr besifloxacin (BES), cinoxacin (CIN), ciprofloxacin (CIP), ciprofloxacin/metronidazole (CIM), ciprofloxacin/ornidazole (CIO), ciprofloxacin/tinidazole (CIT), clinafloxacin (CLX), danofloxacin (DAN), delafloxacin (DFX), difloxacin (DIF), enoxacin (ENX), enrofloxacin (ENR), finafloxacin (FIN), fleroxacin (FLE), flumequine (FLM), garenoxacin (GRN), gatifloxacin (GAT), gemifloxacin (GEM), grepafloxacin (GRX), lascufloxacin (LSC), levofloxacin (LVX), levonadifloxacin (LND), lomefloxacin (LOM), marbofloxacin (MAR), metioxate (MXT), miloxacin (MIL), moxifloxacin (MFX), nadifloxacin (NAD), nalidixic acid (NAL), nemonoxacin (NEM), nifuroquine (NIF), nitroxoline (NTR), norfloxacin (NOR), ofloxacin (OFX), orbifloxacin (ORB), oxolinic acid (OXO), pazufloxacin (PAZ), pefloxacin (PEF), pipemidic acid (PPA), piromidic acid (PIR), pradofloxacin (PRA), premafloxacin (PRX), prulifloxacin (PRU), rosoxacin (ROS), rufloxacin (RFL), sarafloxacin (SAR), sitafloxacin (SIT), sparfloxacin (SPX), temafloxacin (TMX), tilbroquinol (TBQ), tioxacin (TXC), tosufloxacin (TFX), and trovafloxacin (TVA)
\item \code{\link[=rifamycins]{rifamycins()}} can select: \cr rifabutin (RIB), rifampicin (RIF), rifampicin/ethambutol/isoniazid (REI), rifampicin/isoniazid (RFI), rifampicin/pyrazinamide/ethambutol/isoniazid (RPEI), rifampicin/pyrazinamide/isoniazid (RPI), rifamycin (RFM), and rifapentine (RFP)
\item \code{\link[=streptogramins]{streptogramins()}} can select: \cr pristinamycin (PRI) and quinupristin/dalfopristin (QDA)
\item \code{\link[=tetracyclines]{tetracyclines()}} can select: \cr cetocycline (CTO), chlortetracycline (CTE), clomocycline (CLM1), demeclocycline (DEM), doxycycline (DOX), eravacycline (ERV), lymecycline (LYM), metacycline (MTC), minocycline (MNO), omadacycline (OMC), oxytetracycline (OXY), penimepicycline (PNM1), rolitetracycline (RLT), sarecycline (SRC), tetracycline (TCY), and tigecycline (TGC)
\item \code{\link[=trimethoprims]{trimethoprims()}} can select: \cr brodimoprim (BDP), sulfadiazine (SDI), sulfadiazine/tetroxoprim (SLT), sulfadiazine/trimethoprim (SLT1), sulfadimethoxine (SUD), sulfadimidine (SDM), sulfadimidine/trimethoprim (SLT2), sulfafurazole (SLF), sulfaisodimidine (SLF1), sulfalene (SLF2), sulfamazone (SZO), sulfamerazine (SLF3), sulfamerazine/trimethoprim (SLT3), sulfamethizole (SLF4), sulfamethoxazole (SMX), sulfamethoxypyridazine (SLF5), sulfametomidine (SLF6), sulfametoxydiazine (SLF7), sulfametrole/trimethoprim (SLT4), sulfamoxole (SLF8), sulfamoxole/trimethoprim (SLT5), sulfanilamide (SLF9), sulfaperin (SLF10), sulfaphenazole (SLF11), sulfapyridine (SLF12), sulfathiazole (SUT), sulfathiourea (SLF13), trimethoprim (TMP), and trimethoprim/sulfamethoxazole (SXT)

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@ -4,9 +4,9 @@
\name{antibiotics}
\alias{antibiotics}
\alias{antivirals}
\title{Data Sets with 603 Antimicrobial Drugs}
\title{Data Sets with 604 Antimicrobial Drugs}
\format{
\subsection{For the \link{antibiotics} data set: a \link[tibble:tibble]{tibble} with 483 observations and 14 variables:}{
\subsection{For the \link{antibiotics} data set: a \link[tibble:tibble]{tibble} with 484 observations and 14 variables:}{
\itemize{
\item \code{ab}\cr Antibiotic ID as used in this package (such as \code{AMC}), using the official EARS-Net (European Antimicrobial Resistance Surveillance Network) codes where available. \emph{This is a unique identifier.}
\item \code{cid}\cr Compound ID as found in PubChem. \emph{This is a unique identifier.}

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@ -86,7 +86,7 @@ x
#> amoxicillin (AMX), ampicillin (AMP), azlocillin (AZL), mezlocillin (MEZ), piperacillin (PIP), piperacillin/tazobactam (TZP)
}\if{html}{\out{</div>}}
These 28 antibiotic groups are allowed in the rules (case-insensitive) and can be used in any combination:
These 30 antibiotic groups are allowed in the rules (case-insensitive) and can be used in any combination:
\itemize{
\item aminoglycosides\cr(amikacin, amikacin/fosfomycin, amphotericin B-high, apramycin, arbekacin, astromicin, bekanamycin, dibekacin, framycetin, gentamicin, gentamicin-high, habekacin, hygromycin, isepamicin, kanamycin, kanamycin-high, kanamycin/cephalexin, micronomicin, neomycin, netilmicin, pentisomicin, plazomicin, propikacin, ribostamycin, sisomicin, streptoduocin, streptomycin, streptomycin-high, tobramycin, and tobramycin-high)
\item aminopenicillins\cr(amoxicillin and ampicillin)
@ -104,13 +104,15 @@ These 28 antibiotic groups are allowed in the rules (case-insensitive) and can b
\item fluoroquinolones\cr(besifloxacin, ciprofloxacin, clinafloxacin, danofloxacin, delafloxacin, difloxacin, enoxacin, enrofloxacin, finafloxacin, fleroxacin, garenoxacin, gatifloxacin, gemifloxacin, grepafloxacin, lascufloxacin, levofloxacin, levonadifloxacin, lomefloxacin, marbofloxacin, metioxate, miloxacin, moxifloxacin, nadifloxacin, nifuroquine, norfloxacin, ofloxacin, orbifloxacin, pazufloxacin, pefloxacin, pradofloxacin, premafloxacin, prulifloxacin, rufloxacin, sarafloxacin, sitafloxacin, sparfloxacin, temafloxacin, tilbroquinol, tioxacin, tosufloxacin, and trovafloxacin)
\item glycopeptides\cr(avoparcin, dalbavancin, norvancomycin, oritavancin, ramoplanin, teicoplanin, teicoplanin-macromethod, telavancin, vancomycin, and vancomycin-macromethod)
\item glycopeptides_except_lipo\cr(avoparcin, norvancomycin, ramoplanin, teicoplanin, teicoplanin-macromethod, vancomycin, and vancomycin-macromethod)
\item lincosamides\cr(acetylmidecamycin, acetylspiramycin, clindamycin, gamithromycin, kitasamycin, lincomycin, meleumycin, nafithromycin, pirlimycin, primycin, solithromycin, tildipirosin, tilmicosin, tulathromycin, tylosin, and tylvalosin)
\item lincosamides\cr(acetylmidecamycin, acetylspiramycin, clindamycin, clindamycin inducible screening, gamithromycin, kitasamycin, lincomycin, meleumycin, nafithromycin, pirlimycin, primycin, solithromycin, tildipirosin, tilmicosin, tulathromycin, tylosin, and tylvalosin)
\item lipoglycopeptides\cr(dalbavancin, oritavancin, and telavancin)
\item macrolides\cr(acetylmidecamycin, acetylspiramycin, azithromycin, clarithromycin, dirithromycin, erythromycin, flurithromycin, gamithromycin, josamycin, kitasamycin, meleumycin, midecamycin, miocamycin, nafithromycin, oleandomycin, pirlimycin, primycin, rokitamycin, roxithromycin, solithromycin, spiramycin, telithromycin, tildipirosin, tilmicosin, troleandomycin, tulathromycin, tylosin, and tylvalosin)
\item nitrofurans\cr(furazidin, furazolidone, nifurtoinol, nitrofurantoin, and nitrofurazone)
\item oxazolidinones\cr(cadazolid, cycloserine, linezolid, tedizolid, and thiacetazone)
\item penicillins\cr(amoxicillin, amoxicillin/clavulanic acid, amoxicillin/sulbactam, ampicillin, ampicillin/sulbactam, apalcillin, aspoxicillin, avibactam, azidocillin, azlocillin, aztreonam, aztreonam/avibactam, aztreonam/nacubactam, bacampicillin, benzathine benzylpenicillin, benzathine phenoxymethylpenicillin, benzylpenicillin, carbenicillin, carindacillin, cefepime/nacubactam, ciclacillin, clometocillin, cloxacillin, dicloxacillin, epicillin, flucloxacillin, hetacillin, lenampicillin, mecillinam, metampicillin, meticillin, mezlocillin, mezlocillin/sulbactam, nacubactam, nafcillin, oxacillin, penamecillin, penicillin/novobiocin, penicillin/sulbactam, pheneticillin, phenoxymethylpenicillin, piperacillin, piperacillin/sulbactam, piperacillin/tazobactam, piridicillin, pivampicillin, pivmecillinam, procaine benzylpenicillin, propicillin, sarmoxicillin, sulbactam, sulbenicillin, sultamicillin, talampicillin, tazobactam, temocillin, ticarcillin, and ticarcillin/clavulanic acid)
\item polymyxins\cr(colistin, polymyxin B, and polymyxin B/polysorbate 80)
\item quinolones\cr(besifloxacin, cinoxacin, ciprofloxacin, clinafloxacin, danofloxacin, delafloxacin, difloxacin, enoxacin, enrofloxacin, finafloxacin, fleroxacin, flumequine, garenoxacin, gatifloxacin, gemifloxacin, grepafloxacin, lascufloxacin, levofloxacin, levonadifloxacin, lomefloxacin, marbofloxacin, metioxate, miloxacin, moxifloxacin, nadifloxacin, nalidixic acid, nemonoxacin, nifuroquine, nitroxoline, norfloxacin, ofloxacin, orbifloxacin, oxolinic acid, pazufloxacin, pefloxacin, pipemidic acid, piromidic acid, pradofloxacin, premafloxacin, prulifloxacin, rosoxacin, rufloxacin, sarafloxacin, sitafloxacin, sparfloxacin, temafloxacin, tilbroquinol, tioxacin, tosufloxacin, and trovafloxacin)
\item quinolones\cr(besifloxacin, cinoxacin, ciprofloxacin, ciprofloxacin/metronidazole, ciprofloxacin/ornidazole, ciprofloxacin/tinidazole, clinafloxacin, danofloxacin, delafloxacin, difloxacin, enoxacin, enrofloxacin, finafloxacin, fleroxacin, flumequine, garenoxacin, gatifloxacin, gemifloxacin, grepafloxacin, lascufloxacin, levofloxacin, levonadifloxacin, lomefloxacin, marbofloxacin, metioxate, miloxacin, moxifloxacin, nadifloxacin, nalidixic acid, nemonoxacin, nifuroquine, nitroxoline, norfloxacin, ofloxacin, orbifloxacin, oxolinic acid, pazufloxacin, pefloxacin, pipemidic acid, piromidic acid, pradofloxacin, premafloxacin, prulifloxacin, rosoxacin, rufloxacin, sarafloxacin, sitafloxacin, sparfloxacin, temafloxacin, tilbroquinol, tioxacin, tosufloxacin, and trovafloxacin)
\item rifamycins\cr(rifabutin, rifampicin, rifampicin/ethambutol/isoniazid, rifampicin/isoniazid, rifampicin/pyrazinamide/ethambutol/isoniazid, rifampicin/pyrazinamide/isoniazid, rifamycin, and rifapentine)
\item streptogramins\cr(pristinamycin and quinupristin/dalfopristin)
\item tetracyclines\cr(cetocycline, chlortetracycline, clomocycline, demeclocycline, doxycycline, eravacycline, lymecycline, metacycline, minocycline, omadacycline, oxytetracycline, penimepicycline, rolitetracycline, sarecycline, tetracycline, and tigecycline)
\item tetracyclines_except_tgc\cr(cetocycline, chlortetracycline, clomocycline, demeclocycline, doxycycline, eravacycline, lymecycline, metacycline, minocycline, omadacycline, oxytetracycline, penimepicycline, rolitetracycline, sarecycline, and tetracycline)