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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Random MIC Values/Disk Zones/SIR Generation — random • AMR (for R)</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Lato-0.4.9/font.css" rel="stylesheet"><link href="../deps/Fira_Code-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><script src="../extra.js"></script><meta property="og:title" content="Random MIC Values/Disk Zones/SIR Generation — random"><meta name="description" content="These functions can be used for generating random MIC values and disk diffusion diameters, for AMR data analysis practice. By providing a microorganism and antimicrobial drug, the generated results will reflect reality as much as possible."><meta property="og:description" content="These functions can be used for generating random MIC values and disk diffusion diameters, for AMR data analysis practice. By providing a microorganism and antimicrobial drug, the generated results will reflect reality as much as possible."><meta property="og:image" content="https://msberends.github.io/AMR/logo.svg"><link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/katex@0.16.11/dist/katex.min.css" integrity="sha384-nB0miv6/jRmo5UMMR1wu3Gz6NLsoTkbqJghGIsx//Rlm+ZU03BU6SQNC66uf4l5+" crossorigin="anonymous"><script defer src="https://cdn.jsdelivr.net/npm/katex@0.16.11/dist/katex.min.js" integrity="sha384-7zkQWkzuo3B5mTepMUcHkMB5jZaolc2xDwL6VFqjFALcbeS9Ggm/Yr2r3Dy4lfFg" crossorigin="anonymous"></script><script defer src="https://cdn.jsdelivr.net/npm/katex@0.16.11/dist/contrib/auto-render.min.js" integrity="sha384-43gviWU0YVjaDtb/GhzOouOXtZMP/7XUzwPTstBeZFe/+rCMvRwr4yROQP43s0Xk" crossorigin="anonymous" onload="renderMathInElement(document.body);"></script></head><body>
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 16 4 0.125 4 0.005 0.001 0.01 >=128 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 16 0.001 64 64 0.125 0.001 64 0.0625 0.002 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 64 2 0.25 0.01 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.005 4 0.005 8 0.0625 2 0.125 0.025 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.002 0.001 32 8 64 16 0.01 8 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.25 16 0.0625 32 >=256 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 28 21 50 8 29 44 46 42 24 6 41 19 39 48 19 18 49 7 15 36 50 50 48 8 35</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 42 25 50 41 34 45 37 31 14 48 43 11 44 45 22 49 42 29 36 50 31 41 49 23 41</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I I I I R S I I R I R S I R I I R R I S S I I S R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R R R S R S S R I R R R I S R I R I S I S R I R R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 16 0.025 4 32 0.025 0.002 0.0625 2 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.0625 0.125 0.001 16 0.001 1 0.25 0.5 64 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 4 4 0.125 0.002 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 16 8 0.025 32 1 2 0.025 64 0.25 1 0.005</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.25 32 1 0.5 16 0.25 0.125 0.025 1 0.001 0.125 0.005</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=16 0.5 8 8 4 >=16 1 1 4 1 8 4 >=16 4 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 1 >=16 4 2 2 4 2 8 0.5 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=32 8 2 2 16 1 2 2 2 4 2 >=32 16 >=32 >=32</span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 2 4 1 2 16 4 >=32 8 16 2 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=8 4 2 <=0.0625 0.25 1 1 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] <=0.0625 0.25 0.5 1 >=8 1 2 <=0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [17] >=8 <=0.0625 1 1 1 4 0.125 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 0.0625 >=16 8 2 0.0625 1 0.125 0.25 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 4 0.0625 0.25 1 0.0625 1 0.125 8 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 2 2 4 0.0625 2 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 46 20 39 24 36 50 42 15 12 11 17 40 16 46 44 48 50 24 50 29 14 39 43 14</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 38 47 47 49 23 43 41 49 31 43 26 46 49 48 49 42 40 24 44 23 50 11 42 13 33</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 11 11 13 11 16 17 16 11 11 14 11 11 14 16 14 16 12 12 13 14 13 17 12 11</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 16 12 13 11 17 16 11 14 17 17 16 11 15 14 16 12 15 16 14 15 13 16 14 12</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 25 16 23 19 25 20 24 17 27 16 18 17 18 20 19 24 20 23 23 20 19 25 23 17 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 27 19 22 22 27 17 19 25 25 27 16 25 24 15 24 27 25 26 21 22 23 25 23 25</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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