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freq fix
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parent
5eda991c47
commit
c3ae6b7699
@ -69,6 +69,7 @@ R-release:
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- '*.Rcheck/*'
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expire_in: '1 month'
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cache:
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when: always
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key: "r350"
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paths:
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- installed_deps/
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@ -99,6 +100,7 @@ R-devel:
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- '*.Rcheck/*'
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expire_in: '1 month'
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cache:
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when: always
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key: "r360"
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paths:
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- installed_deps/
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@ -1,6 +1,6 @@
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Package: AMR
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Version: 0.6.1.9003
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Date: 2019-05-16
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Date: 2019-05-17
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Title: Antimicrobial Resistance Analysis
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Authors@R: c(
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person(
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10
R/freq.R
10
R/freq.R
@ -585,10 +585,12 @@ format_header <- function(x, markdown = FALSE, decimal.mark = ".", big.mark = ",
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# FORMATTING
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# rsi
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if (has_length == TRUE & any(x_class == "rsi")) {
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ab <- tryCatch(as.ab(attributes(x)$opt$vars), error = function(e) NA)
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if (!is.na(ab) & isTRUE(length(ab) > 0)) {
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header$drug <- paste0(ab_name(ab[1L]), " (", ab[1L], ", ", ab_atc(ab[1L]), ")")
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header$group <- ab_group(ab[1L])
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if (!is.null(attributes(x)$opt$vars)) {
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ab <- tryCatch(as.ab(attributes(x)$opt$vars), error = function(e) NA)
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if (!is.na(ab) & isTRUE(length(ab) > 0)) {
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header$drug <- paste0(ab_name(ab[1L]), " (", ab[1L], ", ", ab_atc(ab[1L]), ")")
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header$group <- ab_group(ab[1L])
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}
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}
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header$`%SI` <- percent(header$count_SI / (header$count_SI + header$count_R),
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force_zero = TRUE, round = digits, decimal.mark = decimal.mark)
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@ -259,6 +259,8 @@
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<span class='fu'>ab_ddd</span>(<span class='no'>x</span>, <span class='kw'>administration</span> <span class='kw'>=</span> <span class='st'>"oral"</span>, <span class='kw'>units</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='no'>...</span>)
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<span class='fu'>ab_info</span>(<span class='no'>x</span>, <span class='kw'>language</span> <span class='kw'>=</span> <span class='fu'><a href='translate.html'>get_locale</a></span>(), <span class='no'>...</span>)
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<span class='fu'>ab_property</span>(<span class='no'>x</span>, <span class='kw'>property</span> <span class='kw'>=</span> <span class='st'>"name"</span>, <span class='kw'>language</span> <span class='kw'>=</span> <span class='fu'><a href='translate.html'>get_locale</a></span>(), <span class='no'>...</span>)</pre>
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<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
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@ -379,7 +379,7 @@
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</tr><tr>
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<td>
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<p><code><a href="ab_property.html">ab_name()</a></code> <code><a href="ab_property.html">ab_atc()</a></code> <code><a href="ab_property.html">ab_cid()</a></code> <code><a href="ab_property.html">ab_synonyms()</a></code> <code><a href="ab_property.html">ab_tradenames()</a></code> <code><a href="ab_property.html">ab_group()</a></code> <code><a href="ab_property.html">ab_atc_group1()</a></code> <code><a href="ab_property.html">ab_atc_group2()</a></code> <code><a href="ab_property.html">ab_ddd()</a></code> <code><a href="ab_property.html">ab_property()</a></code> </p>
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<p><code><a href="ab_property.html">ab_name()</a></code> <code><a href="ab_property.html">ab_atc()</a></code> <code><a href="ab_property.html">ab_cid()</a></code> <code><a href="ab_property.html">ab_synonyms()</a></code> <code><a href="ab_property.html">ab_tradenames()</a></code> <code><a href="ab_property.html">ab_group()</a></code> <code><a href="ab_property.html">ab_atc_group1()</a></code> <code><a href="ab_property.html">ab_atc_group2()</a></code> <code><a href="ab_property.html">ab_ddd()</a></code> <code><a href="ab_property.html">ab_info()</a></code> <code><a href="ab_property.html">ab_property()</a></code> </p>
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</td>
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<td><p>Property of an antibiotic</p></td>
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</tr><tr>
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