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(v0.9.0.9020) as.mo() improvement

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dr. M.S. (Matthijs) Berends
2020-02-09 22:04:29 +01:00
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NEWS.md
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# AMR 0.9.0.9019
## <small>Last updated: 01-Feb-2020</small>
# AMR 0.9.0.9020
## <small>Last updated: 09-Feb-2020</small>
### New
* Support for LOINC and SNOMED codes
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### Changes
* The `as.mo()` function previously wrote to the package folder to improve calculation speed for previously calculated results. This is no longer the case, to comply with CRAN policies. Consequently, the function `clear_mo_history()` was removed.
* Bugfix for some WHONET microorganism codes that were not interpreted correctly when using `as.rsi()`
* Speed improvement for `as.mo()` (and consequently all `mo_*` functions that use `as.mo()` internally), especially for the *G. species* format (G for genus), like *E. coli* and *K penumoniae*
* Better support for determination of *Salmonella* biovars
* Improvements for the algorithm used by `as.mo()` (and consequently all `mo_*` functions, that use `as.mo()` internally):
* Support for missing spaces, e.g. in `as.mo("Methicillin-resistant S.aureus")`
* Better support for determination of *Salmonella* biovars
* Speed improvements, especially for the *G. species* format (G for genus), like *E. coli* and *K pneumoniae*
* Support for more common codes used in laboratory information systems
* Input values for `as.disk()` limited to a maximum of 50 millimeters
* Added a lifecycle state to every function, following [the lifecycle circle of the `tidyverse`](https://www.tidyverse.org/lifecycle)
* For in `as.ab()`: support for drugs starting with "co-" like co-amoxiclav, co-trimoxazole, co-trimazine and co-trimazole (thanks to Peter Dutey)