P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-09 02:41:56 +02:00
Code Releases Activity

(v0.9.0.9020) as.mo() improvement

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2020-02-09 22:04:29 +01:00
parent 4e1c16c5a5
commit c7a76ba713
35 changed files with 70179 additions and 70116 deletions
Download Patch File Download Diff File Expand all files Collapse all files

21
docs/news/index.html
View File

@ -84,7 +84,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">0.9.0.9019</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">0.9.0.9020</span>
</span>
</div>
@ -231,13 +231,13 @@
</div>
<div id="amr-0-9-0-9019" class="section level1">
<div id="amr-0-9-0-9020" class="section level1">
<h1 class="page-header">
<a href="#amr-0-9-0-9019" class="anchor"></a>AMR 0.9.0.9019<small> Unreleased </small>
<a href="#amr-0-9-0-9020" class="anchor"></a>AMR 0.9.0.9020<small> Unreleased </small>
</h1>
<div id="last-updated-01-feb-2020" class="section level2">
<div id="last-updated-09-feb-2020" class="section level2">
<h2 class="hasAnchor">
<a href="#last-updated-01-feb-2020" class="anchor"></a><small>Last updated: 01-Feb-2020</small>
<a href="#last-updated-09-feb-2020" class="anchor"></a><small>Last updated: 09-Feb-2020</small>
</h2>
<div id="new" class="section level3">
<h3 class="hasAnchor">
@ -275,9 +275,16 @@
<li>The <code><a href="../reference/as.mo.html">as.mo()</a></code> function previously wrote to the package folder to improve calculation speed for previously calculated results. This is no longer the case, to comply with CRAN policies. Consequently, the function <code>clear_mo_history()</code> was removed.</li>
<li>Bugfix for some WHONET microorganism codes that were not interpreted correctly when using <code><a href="../reference/as.rsi.html">as.rsi()</a></code>
</li>
<li>Speed improvement for <code><a href="../reference/as.mo.html">as.mo()</a></code> (and consequently all <code>mo_*</code> functions that use <code><a href="../reference/as.mo.html">as.mo()</a></code> internally), especially for the <em>G. species</em> format (G for genus), like <em>E. coli</em> and <em>K penumoniae</em>
<li>Improvements for the algorithm used by <code><a href="../reference/as.mo.html">as.mo()</a></code> (and consequently all <code>mo_*</code> functions, that use <code><a href="../reference/as.mo.html">as.mo()</a></code> internally):
<ul>
<li>Support for missing spaces, e.g. in <code><a href="../reference/as.mo.html">as.mo("Methicillin-resistant S.aureus")</a></code>
</li>
<li>Better support for determination of <em>Salmonella</em> biovars</li>
<li>Speed improvements, especially for the <em>G. species</em> format (G for genus), like <em>E. coli</em> and <em>K pneumoniae</em>
</li>
<li>Support for more common codes used in laboratory information systems</li>
</ul>
</li>
<li>Input values for <code><a href="../reference/as.disk.html">as.disk()</a></code> limited to a maximum of 50 millimeters</li>
<li>Added a lifecycle state to every function, following <a href="https://www.tidyverse.org/lifecycle">the lifecycle circle of the <code>tidyverse</code></a>
</li>
@ -1460,7 +1467,7 @@ Using <code><a href="../reference/as.mo.html">as.mo(..., allow_uncertain = 3)</a
<div id="tocnav">
<h2>Contents</h2>
<ul class="nav nav-pills nav-stacked">
<li><a href="#amr-0-9-0-9019">0.9.0.9019</a></li>
<li><a href="#amr-0-9-0-9020">0.9.0.9020</a></li>
<li><a href="#amr-0-9-0">0.9.0</a></li>
<li><a href="#amr-0-8-0">0.8.0</a></li>
<li><a href="#amr-0-7-1">0.7.1</a></li>