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(v0.9.0.9020) as.mo() improvement

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dr. M.S. (Matthijs) Berends
2020-02-09 22:04:29 +01:00
parent 4e1c16c5a5
commit c7a76ba713
35 changed files with 70179 additions and 70116 deletions
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man/as.mo.Rd
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@@ -68,7 +68,7 @@ A microorganism ID from this package (class: \code{\link{mo}}) typically looks l
Values that cannot be coered will be considered 'unknown' and will get the MO code \code{UNKNOWN}.
Use the \code{\link[=mo_property]{mo_property_*}} functions to get properties based on the returned code, see Examples.
Use the \code{\link[=mo_property]{mo_*}} functions to get properties based on the returned code, see Examples.
The algorithm uses data from the Catalogue of Life (see below) and from one other source (see \link{microorganisms}).
@@ -79,7 +79,7 @@ The \code{\link[=as.mo]{as.mo()}} function uses several coercion rules for fast
\item Breakdown of input values to identify possible matches.
}
This will lead to the effect that e.g. \code{"E. coli"} (a highly prevalent microorganism found in humans) will return the microbial ID of \emph{Escherichia coli} and not \emph{Entamoeba coli} (a less prevalent microorganism in humans), although the latter would alphabetically come first.
This will lead to the effect that e.g. \code{"E. coli"} (a microorganism highly prevalent in humans) will return the microbial ID of \emph{Escherichia coli} and not \emph{Entamoeba coli} (a microorganism less prevalent in humans), although the latter would alphabetically come first.
}
\subsection{Coping with uncertain results}{