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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9004</small>
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@ -385,19 +385,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co">#&gt; rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co">#&gt; 1 I R I I S R</span></span>
<span><span class="co">#&gt; 2 I R R S S I</span></span>
<span><span class="co">#&gt; 3 I R S R R R</span></span>
<span><span class="co">#&gt; 4 R R I R I R</span></span>
<span><span class="co">#&gt; 5 R R R R R S</span></span>
<span><span class="co">#&gt; 6 S R S S R S</span></span>
<span><span class="co">#&gt; 1 I I I R S S</span></span>
<span><span class="co">#&gt; 2 S R R R R S</span></span>
<span><span class="co">#&gt; 3 I R S I I S</span></span>
<span><span class="co">#&gt; 4 I S S S S R</span></span>
<span><span class="co">#&gt; 5 S I R I R R</span></span>
<span><span class="co">#&gt; 6 S I I I I R</span></span>
<span><span class="co">#&gt; kanamycin</span></span>
<span><span class="co">#&gt; 1 I</span></span>
<span><span class="co">#&gt; 2 I</span></span>
<span><span class="co">#&gt; 1 S</span></span>
<span><span class="co">#&gt; 2 R</span></span>
<span><span class="co">#&gt; 3 S</span></span>
<span><span class="co">#&gt; 4 S</span></span>
<span><span class="co">#&gt; 4 I</span></span>
<span><span class="co">#&gt; 5 R</span></span>
<span><span class="co">#&gt; 6 S</span></span></code></pre></div>
<span><span class="co">#&gt; 6 I</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -438,40 +438,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3251</td>
<td align="right">65.02%</td>
<td align="right">3251</td>
<td align="right">65.02%</td>
<td align="right">3214</td>
<td align="right">64.28%</td>
<td align="right">3214</td>
<td align="right">64.28%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">971</td>
<td align="right">19.42%</td>
<td align="right">4222</td>
<td align="right">84.44%</td>
<td align="right">1016</td>
<td align="right">20.32%</td>
<td align="right">4230</td>
<td align="right">84.60%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">468</td>
<td align="right">9.36%</td>
<td align="right">4690</td>
<td align="right">93.80%</td>
<td align="right">424</td>
<td align="right">8.48%</td>
<td align="right">4654</td>
<td align="right">93.08%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">226</td>
<td align="right">4.52%</td>
<td align="right">4916</td>
<td align="right">98.32%</td>
<td align="right">247</td>
<td align="right">4.94%</td>
<td align="right">4901</td>
<td align="right">98.02%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">84</td>
<td align="right">1.68%</td>
<td align="right">99</td>
<td align="right">1.98%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>