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@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9004</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9005</small>
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@ -229,37 +229,37 @@
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">antibiotics</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 483 × 14</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ab cid name group atc atc_g…¹ atc_g…² abbre…³ synon…⁴ oral_…⁵</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;ab&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;lis&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;list&gt;</span> <span style="color: #949494; font-style: italic;">&lt;named&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> AMA <span style="text-decoration: underline;">4</span>649 4-aminosal… Anti… &lt;chr&gt; Drugs … Aminos… &lt;chr&gt; &lt;chr&gt; 12 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> ACM 6<span style="text-decoration: underline;">450</span>012 Acetylmide… Macr… &lt;chr&gt; <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> &lt;chr&gt; &lt;chr&gt; <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> ASP 49<span style="text-decoration: underline;">787</span>020 Acetylspir… Macr… &lt;chr&gt; <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> &lt;chr&gt; &lt;chr&gt; <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> ALS <span style="text-decoration: underline;">8</span>954 Aldesulfon… Othe… &lt;chr&gt; Drugs … Drugs … &lt;chr&gt; &lt;chr&gt; 0.33</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> AMK <span style="text-decoration: underline;">37</span>768 Amikacin Amin… &lt;chr&gt; Aminog… Other … &lt;chr&gt; &lt;chr&gt; <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> AKF <span style="color: #BB0000;">NA</span> Amikacin/f… Amin… &lt;chr&gt; <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> &lt;chr&gt; &lt;chr&gt; <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> AMX <span style="text-decoration: underline;">33</span>613 Amoxicillin Beta… &lt;chr&gt; Beta-l… Penici… &lt;chr&gt; &lt;chr&gt; 1.5 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> AMC 23<span style="text-decoration: underline;">665</span>637 Amoxicilli… Beta… &lt;chr&gt; Beta-l… Combin… &lt;chr&gt; &lt;chr&gt; 1.5 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> AXS <span style="text-decoration: underline;">465</span>441 Amoxicilli… Beta… &lt;chr&gt; <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> &lt;chr&gt; &lt;chr&gt; <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> AMB 5<span style="text-decoration: underline;">280</span>965 Amphoteric… Anti… &lt;chr&gt; Antimy… Antibi… &lt;chr&gt; &lt;chr&gt; 40 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># … with 473 more rows, 4 more variables: oral_units &lt;chr&gt;, iv_ddd &lt;dbl&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># iv_units &lt;chr&gt;, loinc &lt;list&gt;, and abbreviated variable names ¹​atc_group1,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ²​atc_group2, ³​abbreviations, ⁴​synonyms, ⁵​oral_ddd</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> ab cid name group atc atc_group1 atc_group2 abbreviations synonyms</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;ab&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;lis&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;list&gt;</span> <span style="color: #949494; font-style: italic;">&lt;named &gt;</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> AMA <span style="text-decoration: underline;">4</span>649 4-ami… Anti… <span style="color: #949494;">&lt;chr&gt;</span> Drugs for… Aminosali… <span style="color: #949494;">&lt;chr [1]&gt;</span> <span style="color: #949494;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> ACM 6<span style="text-decoration: underline;">450</span>012 Acety… Macr… <span style="color: #949494;">&lt;chr&gt;</span> <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> <span style="color: #949494;">&lt;chr [1]&gt;</span> <span style="color: #949494;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> ASP 49<span style="text-decoration: underline;">787</span>020 Acety… Macr… <span style="color: #949494;">&lt;chr&gt;</span> <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> <span style="color: #949494;">&lt;chr [1]&gt;</span> <span style="color: #949494;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> ALS <span style="text-decoration: underline;">8</span>954 Aldes… Othe… <span style="color: #949494;">&lt;chr&gt;</span> Drugs for… Drugs for… <span style="color: #949494;">&lt;chr [1]&gt;</span> <span style="color: #949494;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> AMK <span style="text-decoration: underline;">37</span>768 Amika… Amin… <span style="color: #949494;">&lt;chr&gt;</span> Aminoglyc… Other ami… <span style="color: #949494;">&lt;chr [5]&gt;</span> <span style="color: #949494;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> AKF <span style="color: #BB0000;">NA</span> Amika… Amin… <span style="color: #949494;">&lt;chr&gt;</span> <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> <span style="color: #949494;">&lt;chr [1]&gt;</span> <span style="color: #949494;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> AMX <span style="text-decoration: underline;">33</span>613 Amoxi… Beta… <span style="color: #949494;">&lt;chr&gt;</span> Beta-lact… Penicilli… <span style="color: #949494;">&lt;chr [3]&gt;</span> <span style="color: #949494;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> AMC 23<span style="text-decoration: underline;">665</span>637 Amoxi… Beta… <span style="color: #949494;">&lt;chr&gt;</span> Beta-lact… Combinati… <span style="color: #949494;">&lt;chr [5]&gt;</span> <span style="color: #949494;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> AXS <span style="text-decoration: underline;">465</span>441 Amoxi… Beta… <span style="color: #949494;">&lt;chr&gt;</span> <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> <span style="color: #949494;">&lt;chr [1]&gt;</span> <span style="color: #949494;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> AMB 5<span style="text-decoration: underline;">280</span>965 Ampho… Anti… <span style="color: #949494;">&lt;chr&gt;</span> Antimycot… Antibioti… <span style="color: #949494;">&lt;chr [3]&gt;</span> <span style="color: #949494;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 473 more rows</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 5 more variables: oral_ddd &lt;dbl&gt;, oral_units &lt;chr&gt;, iv_ddd &lt;dbl&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># iv_units &lt;chr&gt;, loinc &lt;list&gt;</span></span>
<span class="r-in"><span><span class="va">antivirals</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 120 × 11</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> av name atc cid atc_g…¹ synon…² oral_…³ oral_…⁴ iv_ddd iv_un…⁵ loinc</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;av&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;list&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;lis&gt;</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> ABA Abac… J05A… 4.41<span style="color: #949494;">e</span>5 Nucleo… &lt;chr&gt; 0.6 g <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> &lt;chr&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> ACI Acic… J05A… 1.35<span style="color: #949494;">e</span>8 Nucleo… &lt;chr&gt; 4 g 4 g &lt;chr&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> ADD Adef… J05A… 6.09<span style="color: #949494;">e</span>4 Nucleo… &lt;chr&gt; 10 mg <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> &lt;chr&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> AME Amen… J05A… 1.14<span style="color: #949494;">e</span>7 Other … &lt;chr&gt; 0.4 g <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> &lt;chr&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> AMP Ampr… J05A… 6.50<span style="color: #949494;">e</span>4 Protea… &lt;chr&gt; 1.2 g <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> &lt;chr&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> ASU Asun… J05A… 1.61<span style="color: #949494;">e</span>7 Antivi… &lt;chr&gt; 0.2 g <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> &lt;chr&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> ATA Ataz… J05A… 1.48<span style="color: #949494;">e</span>5 Protea… &lt;chr&gt; 0.3 g <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> &lt;chr&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> ATA+… Ataz… J05A… 8.66<span style="color: #949494;">e</span>7 Antivi… &lt;chr&gt; <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> &lt;chr&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> ATA+… Ataz… J05A… 2.51<span style="color: #949494;">e</span>7 Antivi… &lt;chr&gt; 0.3 g <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> &lt;chr&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> BAM Balo… J05A… 1.24<span style="color: #949494;">e</span>8 Other … &lt;chr&gt; 40 mg <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> &lt;chr&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># … with 110 more rows, and abbreviated variable names ¹​atc_group, ²​synonyms,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ³​oral_ddd, ⁴​oral_units, ⁵​iv_units</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> av name atc cid atc_group synonyms oral_ddd oral_units iv_ddd</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;av&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;list&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> ABA Abacavir J05A… 4.41<span style="color: #949494;">e</span>5 Nucleosi… <span style="color: #949494;">&lt;chr&gt;</span> 0.6 g <span style="color: #BB0000;">NA</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> ACI Aciclovir J05A… 1.35<span style="color: #949494;">e</span>8 Nucleosi… <span style="color: #949494;">&lt;chr&gt;</span> 4 g 4</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> ADD Adefovir… J05A… 6.09<span style="color: #949494;">e</span>4 Nucleosi… <span style="color: #949494;">&lt;chr&gt;</span> 10 mg <span style="color: #BB0000;">NA</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> AME Amenamev… J05A… 1.14<span style="color: #949494;">e</span>7 Other an… <span style="color: #949494;">&lt;chr&gt;</span> 0.4 g <span style="color: #BB0000;">NA</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> AMP Amprenav… J05A… 6.50<span style="color: #949494;">e</span>4 Protease… <span style="color: #949494;">&lt;chr&gt;</span> 1.2 g <span style="color: #BB0000;">NA</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> ASU Asunapre… J05A… 1.61<span style="color: #949494;">e</span>7 Antivira… <span style="color: #949494;">&lt;chr&gt;</span> 0.2 g <span style="color: #BB0000;">NA</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> ATA Atazanav… J05A… 1.48<span style="color: #949494;">e</span>5 Protease… <span style="color: #949494;">&lt;chr&gt;</span> 0.3 g <span style="color: #BB0000;">NA</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> ATA+COBI Atazanav… J05A… 8.66<span style="color: #949494;">e</span>7 Antivira… <span style="color: #949494;">&lt;chr&gt;</span> <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> ATA+RIT Atazanav… J05A… 2.51<span style="color: #949494;">e</span>7 Antivira… <span style="color: #949494;">&lt;chr&gt;</span> 0.3 g <span style="color: #BB0000;">NA</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> BAM Baloxavi… J05A… 1.24<span style="color: #949494;">e</span>8 Other an… <span style="color: #949494;">&lt;chr&gt;</span> 40 mg <span style="color: #BB0000;">NA</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 110 more rows</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 2 more variables: iv_units &lt;chr&gt;, loinc &lt;list&gt;</span></span>
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