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(v3.0.1.9007) fix #246

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dr. M.S. (Matthijs) Berends
2026-01-06 23:08:50 +01:00
parent f6e28ac95c
commit cfbbfb4fa5
30 changed files with 628 additions and 444 deletions
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R/data.R
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@@ -38,7 +38,7 @@
#' - `ab`\cr antimicrobial ID as used in this package (such as `AMC`), using the official EARS-Net (European Antimicrobial Resistance Surveillance Network) codes where available. ***This is a unique identifier.***
#' - `cid`\cr Compound ID as found in PubChem. ***This is a unique identifier.***
#' - `name`\cr Official name as used by WHONET/EARS-Net or the WHO. ***This is a unique identifier.***
#' - `group`\cr A short and concise group name, based on WHONET and WHOCC definitions
#' - `group`\cr One or more short and concise group names, based on WHONET and WHOCC definitions
#' - `atc`\cr ATC codes (Anatomical Therapeutic Chemical) as defined by the WHOCC, like `J01CR02` (last updated `r documentation_date(TAXONOMY_VERSION$ATC_DDD$accessed_date)`):
#' - `atc_group1`\cr Official pharmacological subgroup (3rd level ATC code) as defined by the WHOCC, like `"Macrolides, lincosamides and streptogramins"`
#' - `atc_group2`\cr Official chemical subgroup (4th level ATC code) as defined by the WHOCC, like `"Macrolides"`
@@ -368,7 +368,7 @@
#' @format A [tibble][tibble::tibble] with `r format(nrow(esbl_isolates), big.mark = " ")` observations and `r ncol(esbl_isolates)` variables:
#' - `esbl`\cr Logical indicator if the isolate is ESBL-producing
#' - `genus`\cr Genus of the microorganism
#' - `AMC:COL`\cr MIC values for 17 antimicrobial agents, transformed to class [`mic`] (see [as.mic()])
#' - `AMC:COL`\cr MIC values for 17 antimicrobial drugs, transformed to class [`mic`] (see [as.mic()])
#' @details See our [tidymodels integration][amr-tidymodels] for an example using this data set.
#' @examples
#' esbl_isolates