(v3.0.1.9006) Fix website

.github/workflows/todo-tracker.yml

@@ -43,8 +43,12 @@ jobs:
 
       - name: Generate TODO list from R/
         run: |
+          export TZ=Europe/Amsterdam
+          last_updated=$(date +"%e %B %Y %H:%M:%S %Z" | sed 's/^ *//')
           echo "## \`TODO\` Report" > todo.md
           echo "" >> todo.md
+          echo "**Last Updated: ${last_updated}**" >> todo.md
+          echo "" >> todo.md
           echo "_This overview is automatically updated on each push to \`main\`. It provides an automated overview of all mentions of the text \`TODO\`._" >> todo.md
           echo "" >> todo.md
           todos=$(grep -rn --include=\*.{R,Rmd,yaml,yml,md,css,js}  --exclude={todo-tracker.yml,todo.md} "TODO" . || true)

DESCRIPTION

@@ -1,5 +1,5 @@
 Package: AMR
-Version: 3.0.1.9005
+Version: 3.0.1.9006
 Date: 2025-12-21
 Title: Antimicrobial Resistance Data Analysis
 Description: Functions to simplify and standardise antimicrobial resistance (AMR)

NEWS.md

@@ -1,4 +1,4 @@
-# AMR 3.0.1.9005
+# AMR 3.0.1.9006
 
 ### New
 * Integration with the **tidymodels** framework to allow seamless use of SIR, MIC and disk data in modelling pipelines via `recipes`

_pkgdown.yml

@@ -234,7 +234,7 @@ reference:
     - "`antimicrobials`"
     - "`clinical_breakpoints`"
     - "`example_isolates`"
-    # TODO - "`esbl_isolates`"
+    - "`esbl_isolates`"
     - "`microorganisms.codes`"
     - "`microorganisms.groups`"
     - "`intrinsic_resistant`"