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(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)

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dr. M.S. (Matthijs) Berends
2021-01-12 22:08:04 +01:00
parent 3b84b8be75
commit d014955ce0
93 changed files with 3631 additions and 374 deletions
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10
NAMESPACE
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@ -2,19 +2,23 @@
S3method("[",ab)
S3method("[",disk)
S3method("[",isolate_identifier)
S3method("[",mic)
S3method("[",mo)
S3method("[<-",ab)
S3method("[<-",disk)
S3method("[<-",isolate_identifier)
S3method("[<-",mic)
S3method("[<-",mo)
S3method("[<-",rsi)
S3method("[[",ab)
S3method("[[",disk)
S3method("[[",isolate_identifier)
S3method("[[",mic)
S3method("[[",mo)
S3method("[[<-",ab)
S3method("[[<-",disk)
S3method("[[<-",isolate_identifier)
S3method("[[<-",mic)
S3method("[[<-",mo)
S3method("[[<-",rsi)
@ -31,6 +35,7 @@ S3method(barplot,mic)
S3method(barplot,rsi)
S3method(c,ab)
S3method(c,disk)
S3method(c,isolate_identifier)
S3method(c,mic)
S3method(c,mo)
S3method(c,rsi)
@ -48,6 +53,7 @@ S3method(print,ab)
S3method(print,bug_drug_combinations)
S3method(print,catalogue_of_life_version)
S3method(print,disk)
S3method(print,isolate_identifier)
S3method(print,mic)
S3method(print,mo)
S3method(print,mo_renamed)
@ -61,6 +67,7 @@ S3method(summary,mo)
S3method(summary,rsi)
S3method(unique,ab)
S3method(unique,disk)
S3method(unique,isolate_identifier)
S3method(unique,mic)
S3method(unique,mo)
S3method(unique,rsi)
@ -113,6 +120,7 @@ export(count_all)
export(count_df)
export(count_resistant)
export(count_susceptible)
export(eucast_dosage)
export(eucast_exceptional_phenotypes)
export(eucast_rules)
export(facet_rsi)
@ -153,6 +161,7 @@ export(is.mo)
export(is.rsi)
export(is.rsi.eligible)
export(is_new_episode)
export(isolate_identifier)
export(key_antibiotics)
export(key_antibiotics_equal)
export(kurtosis)
@ -175,6 +184,7 @@ export(mo_info)
export(mo_is_gram_negative)
export(mo_is_gram_positive)
export(mo_is_intrinsic_resistant)
export(mo_is_yeast)
export(mo_kingdom)
export(mo_matching_score)
export(mo_name)