P281424
/
AMR
mirror of https://github.com/msberends/AMR.git
1
0
Fork 0
Code Releases Activity

cleanup

This commit is contained in:
dr. M.S. (Matthijs) Berends 2022-11-13 07:39:44 +01:00
parent b142fa12dd
commit d033da29b8
1 changed files with 5 additions and 3 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

8
vignettes/datasets.Rmd
View File

@ -156,7 +156,7 @@ microorganisms %>%
```
## `antibiotics`: Antibiotic Agents
## `antibiotics`: Antibiotic (+Antifungal) Drugs
`r structure_txt(antibiotics)`
@ -173,6 +173,7 @@ This data set contains all EARS-Net and ATC codes gathered from WHO and WHONET,
* [ATC/DDD index from WHO Collaborating Centre for Drug Statistics Methodology](https://www.whocc.no/atc_ddd_index/) (note: this may not be used for commercial purposes, but is freely available from the WHO CC website for personal use)
* [PubChem by the US National Library of Medicine](https://pubchem.ncbi.nlm.nih.gov)
* [WHONET software 2019](https://whonet.org)
* [LOINC (Logical Observation Identifiers Names and Codes](https://loinc.org)
### Example content
@ -183,7 +184,7 @@ antibiotics %>%
```
## `antivirals`: Antiviral Agents
## `antivirals`: Antiviral Drugs
`r structure_txt(antivirals)`
@ -191,7 +192,7 @@ This data set is in R available as `antivirals`, after you load the `AMR` packag
`r download_txt("antivirals")`
The tab-separated text file and Microsoft Excel workbook, and SAS, SPSS and Stata files all contain the trade names as comma separated values.
The tab-separated text file and Microsoft Excel workbook, and SAS, SPSS and Stata files all contain the trade names and LOINC codes as comma separated values.
### Source
@ -199,6 +200,7 @@ This data set contains all ATC codes gathered from WHO and all compound IDs from
* [ATC/DDD index from WHO Collaborating Centre for Drug Statistics Methodology](https://www.whocc.no/atc_ddd_index/) (note: this may not be used for commercial purposes, but is freely available from the WHO CC website for personal use)
* [PubChem by the US National Library of Medicine](https://pubchem.ncbi.nlm.nih.gov)
* [LOINC (Logical Observation Identifiers Names and Codes](https://loinc.org)
### Example content