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https://github.com/msberends/AMR.git
synced 2025-07-11 22:21:53 +02:00
allow column name for ab
in as.sir()
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@ -69,7 +69,7 @@ if (AMR:::pkg_is_available("dplyr", min_version = "1.0.0", also_load = TRUE)) {
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example_isolates %>% count_susceptible(AMC, GEN, only_all_tested = TRUE) +
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example_isolates %>% count_resistant(AMC, GEN, only_all_tested = TRUE)
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)
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# count of cases
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expect_equal(
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example_isolates %>%
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@ -95,8 +95,10 @@ if (AMR:::pkg_is_available("dplyr", min_version = "1.0.0", also_load = TRUE)) {
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example_isolates %>% select(AMX) %>% count_df(combine_SI = FALSE) %>% pull(value),
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c(
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suppressWarnings(example_isolates$AMX %>% count_S()),
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0,
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example_isolates$AMX %>% count_I(),
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example_isolates$AMX %>% count_R()
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example_isolates$AMX %>% count_R(),
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0
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)
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)
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