P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-09-08 01:29:38 +02:00
Code Releases Activity

(v3.0.0.9026) fix tidymodels doc

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2025-09-04 15:03:28 +02:00
parent c1c49fa463
commit d5a568318b
3 changed files with 12 additions and 2 deletions
Download Patch File Download Diff File Expand all files Collapse all files

10
vignettes/AMR_with_tidymodels.Rmd
View File

@@ -221,6 +221,12 @@ In this second example, we demonstrate how to use `<mic>` columns directly in `t
This approach and idea formed the basis for the publication [DOI: 10.3389/fmicb.2025.1582703](https://doi.org/10.3389/fmicb.2025.1582703) to model the presence of extended-spectrum beta-lactamases (ESBL).
> NOTE: THIS EXAMPLE WILL BE AVAILABLE IN A NEXT VERSION (#TODO)
>
> The new AMR package version will contain new tidymodels selectors such as `step_mic_log2()`.
<!--
### **Objective**
Our goal is to:
@@ -347,12 +353,16 @@ ggplot(predictions, aes(x = esbl, fill = .pred_class)) +
theme_minimal()
```
<!--
### **Conclusion**
In this example, we showcased how the new `AMR`-specific recipe steps simplify working with `<mic>` columns in `tidymodels`. The `step_mic_log2()` transformation converts ordered MICs to log2-transformed numerics, improving compatibility with classification models.
This pipeline enables realistic, reproducible, and interpretable modelling of antimicrobial resistance data.
-->
---