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update to septic_patients, speed improvements

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dr. M.S. (Matthijs) Berends
2018-07-25 14:17:04 +02:00
parent 03a3cb397b
commit d9e204031d
26 changed files with 273 additions and 233 deletions
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3
tests/testthat/test-mdro.R
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@ -13,7 +13,8 @@ test_that("MDRO works", {
expect_equal(outcome %>% class(), c('ordered', 'factor'))
# septic_patients should have these finding using Dutch guidelines
expect_equal(outcome %>% freq() %>% pull(count), c(3, 21))
expect_equal(outcome %>% freq() %>% pull(count),
c(2, 14)) # 2 unconfirmed, 14 positive
expect_equal(BRMO(septic_patients, info = FALSE), MDRO(septic_patients, "nl", info = FALSE))