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Update freq function

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uscloud committed 2018-05-22 16:34:22 +02:00
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commit dcc26dd942
71 files changed
+26 -28
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tests/testthat.R
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tests/testthat/test-atc.R
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tests/testthat/test-classes.R
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tests/testthat/test-eucast.R
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tests/testthat/test-first_isolates.R
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tests/testthat/test-freq.R
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tests/testthat/test-joins.R
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tests/testthat/test-mdro.R
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tests/testthat/test-misc.R
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tests/testthat/test-print.R
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tests/testthat/test-rsi_analysis.R
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@@ -2,12 +2,12 @@ context("rsi_analysis.R")
test_that("rsi works", {
# amox resistance in `septic_patients` should be around 53.86%
expect_equal(rsi(septic_patients$amox), 0.5386, tolerance = 0.0001)
expect_equal(rsi(septic_patients$amox), 0.5386, tolerance = 0.0001)
expect_equal(rsi(septic_patients$amox), 0.5756, tolerance = 0.0001)
expect_equal(rsi(septic_patients$amox), 0.5756, tolerance = 0.0001)
expect_equal(rsi_df(septic_patients,
ab = "amox",
info = FALSE),
0.5386,
0.5756,
tolerance = 0.0001)
# pita+genta susceptibility around 98.09%
expect_equal(rsi(septic_patients$pita,