(v1.7.1.9041) new GH actions, branches rename

.github/workflows/check.yaml

@@ -23,16 +23,14 @@
 # how to conduct AMR data analysis: https://msberends.github.io/AMR/   #
 # ==================================================================== #
 
-# This GitHub Actions file runs without ANY dependency, so works on all versions of R since R-3.0.
-
 on:
   push:
     branches:
-      - premaster
-      - master
+      - development
+      - main
   pull_request:
     branches:
-      - master
+      - main
   schedule:
     # run a schedule everyday at 1 AM.
     # this is to check that all dependencies are still available (see R/zzz.R)
@@ -81,45 +79,35 @@ jobs:
           - {os: windows-latest, r: '3.2',     allowfail: false}
 
     env:
-      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: false
       RSPM: ${{ matrix.config.rspm }}
       R_REPOSITORIES: "https://cran.rstudio.com"
-    
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+      R_CHECK_CRAN_INCOMING_: false
+      R_CHECK_FORCE_SUGGESTS_: false
+      R_CHECK_DEPENDS_ONLY_: true
+      R_CHECK_LENGTH_1_CONDITION_: verbose
+      R_CHECK_LENGTH_1_LOGIC2_: verbose
+      # during 'R CMD check', R_LIBS_USER will be overwritten, so:
+      R_LIBS_USER_GH_ACTIONS: ${{ env.R_LIBS_USER }}
+      R_RUN_TINYTEST: true
+
     steps:
       - uses: actions/checkout@v2
 
+      - uses: r-lib/actions/setup-pandoc@v1
+
       - uses: r-lib/actions/setup-r@v1
         with:
           r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
 
-      - name: Install Linux dependencies
-        if: runner.os == 'Linux'
-        # update the below with sysreqs::sysreqs("DESCRIPTION") and check the "DEB" entries (for Ubuntu).
-        # we don't want to depend on the sysreqs pkg here, as it requires quite a recent R version
-        # as of May 2021: https://sysreqs.r-hub.io/pkg/AMR,R,cleaner,curl,dplyr,ggplot2,ggtext,knitr,microbenchmark,pillar,readxl,rmarkdown,rstudioapi,rvest,skimr,tidyr,tinytest,xml2,backports,crayon,rlang,vctrs,evaluate,highr,markdown,stringr,yaml,xfun,cli,ellipsis,fansi,lifecycle,utf8,glue,mime,magrittr,stringi,generics,R6,tibble,tidyselect,pkgconfig,purrr,digest,gtable,isoband,MASS,mgcv,scales,withr,nlme,Matrix,farver,labeling,munsell,RColorBrewer,viridisLite,lattice,colorspace,gridtext,Rcpp,RCurl,png,jpeg,bitops,cellranger,progress,rematch,hms,prettyunits,htmltools,jsonlite,tinytex,base64enc,httr,selectr,openssl,askpass,sys,repr,cpp11
-        run: |
-          sudo apt install -y libssl-dev pandoc pandoc-citeproc libxml2-dev libicu-dev libcurl4-openssl-dev libpng-dev libudunits2-dev
-
-      - name: Query dependencies
-        # this will change every day (i.e. at scheduled night run of GitHub Action), so it will cache dependency updates
-        run: |
-          writeLines(paste0(format(Sys.Date(), "%Y%m%d"), sprintf("-R-%i.%i", getRversion()$major, getRversion()$minor)), ".github/daily-R-bundle")
-        shell: Rscript {0}
-        
-      - name: Restore cached R packages
-        # this step will add the step 'Post Restore cached R packages' on a succesful run
-        uses: actions/cache@v2
+      - uses: r-lib/actions/setup-r-dependencies@v1
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ matrix.config.os }}-${{ hashFiles('.github/daily-R-bundle') }}-v4
-
-      - name: Unpack AMR and install R dependencies
-        if: always()
-        run: |
-          tar -xf data-raw/AMR_latest.tar.gz
-          Rscript -e "source('data-raw/_install_deps.R')"
-        shell: bash
-        
+          extra-packages: rcmdcheck
+          
       - name: Show session info
         if: always()
         run: |
@@ -127,31 +115,17 @@ jobs:
           utils::sessionInfo()
           as.data.frame(utils::installed.packages())[, "Version", drop = FALSE]
         shell: Rscript {0}
-        
-      - name: Run R CMD check
-        if: always()
-        env:
-          _R_CHECK_CRAN_INCOMING_: false
-          _R_CHECK_FORCE_SUGGESTS_: false
-          _R_CHECK_DEPENDS_ONLY_: true
-          _R_CHECK_LENGTH_1_CONDITION_: verbose
-          _R_CHECK_LENGTH_1_LOGIC2_: verbose
-          # during 'R CMD check', R_LIBS_USER will be overwritten, so:
-          R_LIBS_USER_GH_ACTIONS: ${{ env.R_LIBS_USER }}
-          R_RUN_TINYTEST: true
-        run: |
-          R CMD check --no-manual --run-donttest --run-dontrun AMR
-        shell: bash
+
+      - uses: r-lib/actions/check-r-package@v1
 
       - name: Show unit tests output
         if: always()
-        run: |
-          find . -name 'tinytest.Rout*' -exec cat '{}' \; || true
+        run: find check -name 'tinytest.Rout*' -exec cat '{}' \; || true
         shell: bash
 
-      - name: Upload artifacts
+      - name: Upload check results
         if: always()
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@main
         with:
           name: ${{ matrix.config.os }}-r-${{ matrix.config.r }}-artifacts
-          path: AMR.Rcheck
+          path: check

.github/workflows/check.yaml.old

@@ -0,0 +1,157 @@
+# ==================================================================== #
+# TITLE                                                                #
+# Antimicrobial Resistance (AMR) Data Analysis for R                   #
+#                                                                      #
+# SOURCE                                                               #
+# https://github.com/msberends/AMR                                     #
+#                                                                      #
+# LICENCE                                                              #
+# (c) 2018-2021 Berends MS, Luz CF et al.                              #
+# Developed at the University of Groningen, the Netherlands, in        #
+# collaboration with non-profit organisations Certe Medical            #
+# Diagnostics & Advice, and University Medical Center Groningen.       # 
+#                                                                      #
+# This R package is free software; you can freely use and distribute   #
+# it for both personal and commercial purposes under the terms of the  #
+# GNU General Public License version 2.0 (GNU GPL-2), as published by  #
+# the Free Software Foundation.                                        #
+# We created this package for both routine data analysis and academic  #
+# research and it was publicly released in the hope that it will be    #
+# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY.              #
+#                                                                      #
+# Visit our website for the full manual and a complete tutorial about  #
+# how to conduct AMR data analysis: https://msberends.github.io/AMR/   #
+# ==================================================================== #
+
+# This GitHub Actions file runs without ANY dependency, so works on all versions of R since R-3.0.
+
+on:
+  push:
+    branches:
+      - premaster
+      - master
+  pull_request:
+    branches:
+      - master
+  schedule:
+    # run a schedule everyday at 1 AM.
+    # this is to check that all dependencies are still available (see R/zzz.R)
+    - cron:  '0 1 * * *'
+
+name: R-code-check
+
+jobs:
+  R-code-check:
+    runs-on: ${{ matrix.config.os }}
+    
+    continue-on-error: ${{ matrix.config.allowfail }}
+
+    name: ${{ matrix.config.os }} (R-${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          # test all systems against all released versions of R >= 3.0, we support them all!
+          - {os: macOS-latest,   r: 'devel',   allowfail: true}
+          - {os: macOS-latest,   r: '4.1',     allowfail: false}
+          - {os: macOS-latest,   r: '4.0',     allowfail: false}
+          - {os: macOS-latest,   r: '3.6',     allowfail: false}
+          - {os: macOS-latest,   r: '3.5',     allowfail: false}
+          - {os: macOS-latest,   r: '3.4',     allowfail: false}
+          - {os: macOS-latest,   r: '3.3',     allowfail: false}
+          - {os: macOS-latest,   r: '3.2',     allowfail: false}
+          - {os: ubuntu-20.04,   r: 'devel',   allowfail: true,  rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: ubuntu-20.04,   r: '4.1',     allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: ubuntu-20.04,   r: '4.0',     allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: ubuntu-20.04,   r: '3.6',     allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: ubuntu-20.04,   r: '3.5',     allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: ubuntu-20.04,   r: '3.4',     allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: ubuntu-20.04,   r: '3.3',     allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: ubuntu-20.04,   r: '3.2',     allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: ubuntu-20.04,   r: '3.1',     allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: ubuntu-20.04,   r: '3.0',     allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: windows-latest, r: 'devel',   allowfail: true}
+          - {os: windows-latest, r: '4.1',     allowfail: false}
+          - {os: windows-latest, r: '4.0',     allowfail: false}
+          - {os: windows-latest, r: '3.6',     allowfail: false}
+          - {os: windows-latest, r: '3.5',     allowfail: false}
+          - {os: windows-latest, r: '3.4',     allowfail: false}
+          - {os: windows-latest, r: '3.3',     allowfail: false}
+          - {os: windows-latest, r: '3.2',     allowfail: false}
+
+    env:
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+      RSPM: ${{ matrix.config.rspm }}
+      R_REPOSITORIES: "https://cran.rstudio.com"
+    
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@v1
+        with:
+          r-version: ${{ matrix.config.r }}
+
+      - name: Install Linux dependencies
+        if: runner.os == 'Linux'
+        # update the below with sysreqs::sysreqs("DESCRIPTION") and check the "DEB" entries (for Ubuntu).
+        # we don't want to depend on the sysreqs pkg here, as it requires quite a recent R version
+        # as of May 2021: https://sysreqs.r-hub.io/pkg/AMR,R,cleaner,curl,dplyr,ggplot2,ggtext,knitr,microbenchmark,pillar,readxl,rmarkdown,rstudioapi,rvest,skimr,tidyr,tinytest,xml2,backports,crayon,rlang,vctrs,evaluate,highr,markdown,stringr,yaml,xfun,cli,ellipsis,fansi,lifecycle,utf8,glue,mime,magrittr,stringi,generics,R6,tibble,tidyselect,pkgconfig,purrr,digest,gtable,isoband,MASS,mgcv,scales,withr,nlme,Matrix,farver,labeling,munsell,RColorBrewer,viridisLite,lattice,colorspace,gridtext,Rcpp,RCurl,png,jpeg,bitops,cellranger,progress,rematch,hms,prettyunits,htmltools,jsonlite,tinytex,base64enc,httr,selectr,openssl,askpass,sys,repr,cpp11
+        run: |
+          sudo apt install -y libssl-dev pandoc pandoc-citeproc libxml2-dev libicu-dev libcurl4-openssl-dev libpng-dev libudunits2-dev
+
+      - name: Query dependencies
+        # this will change every day (i.e. at scheduled night run of GitHub Action), so it will cache dependency updates
+        run: |
+          writeLines(paste0(format(Sys.Date(), "%Y%m%d"), sprintf("-R-%i.%i", getRversion()$major, getRversion()$minor)), ".github/daily-R-bundle")
+        shell: Rscript {0}
+        
+      - name: Restore cached R packages
+        # this step will add the step 'Post Restore cached R packages' on a succesful run
+        uses: actions/cache@v2
+        with:
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ matrix.config.os }}-${{ hashFiles('.github/daily-R-bundle') }}-v4
+
+      - name: Unpack AMR and install R dependencies
+        if: always()
+        run: |
+          tar -xf data-raw/AMR_latest.tar.gz
+          Rscript -e "source('data-raw/_install_deps.R')"
+        shell: bash
+        
+      - name: Show session info
+        if: always()
+        run: |
+          options(width = 100)
+          utils::sessionInfo()
+          as.data.frame(utils::installed.packages())[, "Version", drop = FALSE]
+        shell: Rscript {0}
+        
+      - name: Run R CMD check
+        if: always()
+        env:
+          _R_CHECK_CRAN_INCOMING_: false
+          _R_CHECK_FORCE_SUGGESTS_: false
+          _R_CHECK_DEPENDS_ONLY_: true
+          _R_CHECK_LENGTH_1_CONDITION_: verbose
+          _R_CHECK_LENGTH_1_LOGIC2_: verbose
+          # during 'R CMD check', R_LIBS_USER will be overwritten, so:
+          R_LIBS_USER_GH_ACTIONS: ${{ env.R_LIBS_USER }}
+          R_RUN_TINYTEST: true
+        run: |
+          R CMD check --no-manual --run-donttest --run-dontrun AMR
+        shell: bash
+
+      - name: Show unit tests output
+        if: always()
+        run: |
+          find . -name 'tinytest.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Upload artifacts
+        if: always()
+        uses: actions/upload-artifact@v2
+        with:
+          name: ${{ matrix.config.os }}-r-${{ matrix.config.r }}-artifacts
+          path: AMR.Rcheck

DESCRIPTION

@@ -1,5 +1,5 @@
 Package: AMR
-Version: 1.7.1.9040
+Version: 1.7.1.9041
 Date: 2021-09-29
 Title: Antimicrobial Resistance Data Analysis
 Description: Functions to simplify and standardise antimicrobial resistance (AMR)

NEWS.md

@@ -1,4 +1,4 @@
-# `AMR` 1.7.1.9040
+# `AMR` 1.7.1.9041
 ## <small>Last updated: 29 September 2021</small>
 
 ### Breaking changes

data-raw/_install_deps.R

@@ -31,7 +31,10 @@ pkg_suggests <- gsub("[^a-zA-Z0-9]+", "",
                      unlist(strsplit(unlist(packageDescription("AMR",
                                                                fields = c("Suggests", "Enhances", "LinkingTo"))),
                                      split = ", ?")))
+pkg_suggests <- unname(pkg_suggests[!is.na(pkg_suggests)])
+cat("################################################\n")
 cat("Packages listed in Suggests/Enhances:", paste(pkg_suggests, collapse = ", "), "\n")
+cat("################################################\n")
 
 if (.Platform$OS.type != "unix") {
   # no compiling on Windows here
@@ -52,6 +55,16 @@ for (i in seq_len(length(to_install))) {
            # message = function(m) invisible(),
            warning = function(w) message(w$message),
            error = function(e) message(e$message))
+  if (.Platform$OS.type != "unix" && !to_install[i] %in% rownames(utils::installed.packages())) {
+    tryCatch(install.packages(to_install[i],
+                              type = "binary",
+                              repos = "https://cran.rstudio.com/",
+                              dependencies = c("Depends", "Imports", "LinkingTo"),
+                              quiet = FALSE),
+             # message = function(m) invisible(),
+             warning = function(w) message(w$message),
+             error = function(e) message(e$message))
+  }
 }
 
 to_update <- as.data.frame(utils::old.packages(repos = "https://cran.rstudio.com/"), stringsAsFactors = FALSE)

docs/articles/datasets.html

@@ -44,7 +44,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">AMR (for R)</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9040</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9041</span>
       </span>
     </div>
 

docs/news/index.html

@@ -92,7 +92,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">AMR (for R)</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9040</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9041</span>
       </span>
     </div>
 
@@ -240,9 +240,9 @@
       <small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
     </div>
 
-    <div id="amr-1719040" class="section level1">
-<h1 class="page-header" data-toc-text="1.7.1.9040">
-<a href="#amr-1719040" class="anchor" aria-hidden="true"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9040</h1>
+    <div id="amr-1719041" class="section level1">
+<h1 class="page-header" data-toc-text="1.7.1.9041">
+<a href="#amr-1719041" class="anchor" aria-hidden="true"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9041</h1>
 <div id="last-updated-29-september-2021" class="section level2">
 <h2 class="hasAnchor">
 <a href="#last-updated-29-september-2021" class="anchor" aria-hidden="true"></a><small>Last updated: 29 September 2021</small>

git_development.sh

@@ -24,26 +24,26 @@
 # ==================================================================== #
 
 ########################################################################
-# `git_premaster.sh` takes 3 parameters:                               #
+# `git_development.sh` takes 3 parameters:                             #
 #   1. Commit message (character) [mandatory]                          #
 #   2. Lazy website generation (logical), with TRUE only changed       #
 #      files will be processed [defaults to TRUE]                      #
 #   3. Version number to be used in DESCRIPTION and NEWS.md            #
 #      [defaults to current tag and last commit number + 9000]         #
 #                                                                      #
-# To push new commits to the premaster branch, run:                    #
-# bash git_premaster.sh "commit message"                               #
+# To push new commits to the development branch, run:                  #
+# bash git_development.sh "commit message"                             #
 # This creates auto version numbering in DESCRIPTION and NEWS.md.      #
 #                                                                      #
-# After successful test checks, merge it to the master branch with:    #
+# After successful test checks, merge it to the main branch with:      #
 # bash git_merge.sh                                                    #
 #                                                                      #
 # To prerelease a new version number, run:                             #
-# bash git_premaster.sh "v1.x.x" FALSE "1.x.x"                         #
+# bash git_development.sh "v1.x.x" FALSE "1.x.x"                       #
 #                                                                      #
 # To only update the website, run:                                     #
 # bash git_siteonly.sh                                                 #
-# (which is short for 'bash git_premaster.sh "website update" FALSE')  #
+# (which is short for 'bash git_development.sh "website update" FALSE')#
 ########################################################################
 
 if [ -z "$1" ]; then
@@ -56,8 +56,8 @@ else
   lazy=$2
 fi
 
-# be sure to be on premaster branch
-git checkout premaster --quiet
+# be sure to be on development branch
+git checkout development --quiet
 
 echo "••••••••••••••••••••••••••••••••••••••••••••"
 echo "• Updating package date and version number •"
@@ -127,7 +127,7 @@ echo "••••••••••••••••••••"
 echo "• Building package •"
 echo "••••••••••••••••••••"
 echo "• Building 'data-raw/AMR_latest.tar.gz'..."
-Rscript -e "x <- devtools::build(path = 'data-raw', vignettes = FALSE, manual = FALSE, binary = FALSE, quiet = TRUE)"
+Rscript -e "x <- devtools::build(path = 'data-raw', vignettes = TRUE, manual = TRUE, binary = FALSE, quiet = TRUE)"
 rm data-raw/AMR_latest.tar.gz
 mv data-raw/AMR_*.tar.gz data-raw/AMR_latest.tar.gz
 
@@ -193,7 +193,7 @@ git add .
 git commit -a -m "(v${new_version}) $1" --quiet
 git push --quiet
 echo "Comparison:"
-echo "https://github.com/msberends/AMR/compare/master...premaster?view=inline"
+echo "https://github.com/msberends/AMR/compare/main...development?view=inline"
 
 echo
 echo "•••••••••"

git_merge.sh

@@ -24,44 +24,44 @@
 # ==================================================================== #
 
 ########################################################################
-# `git_premaster.sh` takes 3 parameters:                               #
+# `git_development.sh` takes 3 parameters:                             #
 #   1. Commit message (character) [mandatory]                          #
 #   2. Lazy website generation (logical), with TRUE only changed       #
 #      files will be processed [defaults to TRUE]                      #
 #   3. Version number to be used in DESCRIPTION and NEWS.md            #
 #      [defaults to current tag and last commit number + 9000]         #
 #                                                                      #
-# To push new commits to the premaster branch, run:                    #
-# bash git_premaster.sh "commit message"                               #
+# To push new commits to the development branch, run:                  #
+# bash git_development.sh "commit message"                             #
 # This creates auto version numbering in DESCRIPTION and NEWS.md.      #
 #                                                                      #
-# After successful test checks, merge it to the master branch with:    #
+# After successful test checks, merge it to the main branch with:      #
 # bash git_merge.sh                                                    #
 #                                                                      #
 # To prerelease a new version number, run:                             #
-# bash git_premaster.sh "v1.x.x" FALSE "1.x.x"                         #
+# bash git_development.sh "v1.x.x" FALSE "1.x.x"                       #
 #                                                                      #
 # To only update the website, run:                                     #
 # bash git_siteonly.sh                                                 #
-# (which is short for 'bash git_premaster.sh "website update" FALSE')  #
+# (which is short for 'bash git_development.sh "website update" FALSE')#
 ########################################################################
 
 # stash current changes
 # git stash --quiet
 
-# go to master
-git checkout master --quiet
-echo "• changed branch to master"
+# go to main
+git checkout main --quiet
+echo "• changed branch to main"
 
-# import everything from premaster
-git merge premaster --quiet
+# import everything from development
+git merge development --quiet
 # and send it to git
 git push --quiet
-echo "• pushed changes to master"
+echo "• pushed changes to main"
 
-# return to premaster
-git checkout premaster --quiet
-echo "• changed branch back to premaster"
+# return to development
+git checkout development --quiet
+echo "• changed branch back to development"
 git status --short
 echo
 

git_siteonly.sh

@@ -24,35 +24,35 @@
 # ==================================================================== #
 
 ########################################################################
-# `git_premaster.sh` takes 3 parameters:                               #
+# `git_development.sh` takes 3 parameters:                             #
 #   1. Commit message (character) [mandatory]                          #
 #   2. Lazy website generation (logical), with TRUE only changed       #
 #      files will be processed [defaults to TRUE]                      #
 #   3. Version number to be used in DESCRIPTION and NEWS.md            #
 #      [defaults to current tag and last commit number + 9000]         #
 #                                                                      #
-# To push new commits to the premaster branch, run:                    #
-# bash git_premaster.sh "commit message"                               #
+# To push new commits to the development branch, run:                  #
+# bash git_development.sh "commit message"                             #
 # This creates auto version numbering in DESCRIPTION and NEWS.md.      #
 #                                                                      #
-# After successful test checks, merge it to the master branch with:    #
+# After successful test checks, merge it to the main branch with:      #
 # bash git_merge.sh                                                    #
 #                                                                      #
 # To prerelease a new version number, run:                             #
-# bash git_premaster.sh "v1.x.x" FALSE "1.x.x"                         #
+# bash git_development.sh "v1.x.x" FALSE "1.x.x"                       #
 #                                                                      #
 # To only update the website, run:                                     #
 # bash git_siteonly.sh                                                 #
-# (which is short for 'bash git_premaster.sh "website update" FALSE')  #
+# (which is short for 'bash git_development.sh "website update" FALSE')#
 ########################################################################
 
-bash git_premaster.sh "website update" FALSE
+bash git_development.sh "website update" FALSE
 
 echo
-echo "••••••••••••••••••••••••••••••"
-echo "• Uploading to master branch •"
-echo "••••••••••••••••••••••••••••••"
-git checkout master
-git merge premaster
+echo "••••••••••••••••••••••••••••"
+echo "• Uploading to main branch •"
+echo "••••••••••••••••••••••••••••"
+git checkout main
+git merge development
 git push --quiet
-git checkout premaster
+git checkout development