mirror of
https://github.com/msberends/AMR.git
synced 2024-12-25 18:06:12 +01:00
(v1.7.1.9041) new GH actions, branches rename
This commit is contained in:
parent
93a4734b44
commit
e8d3ce05d7
76
.github/workflows/check.yaml
vendored
76
.github/workflows/check.yaml
vendored
@ -23,16 +23,14 @@
|
||||
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
|
||||
# ==================================================================== #
|
||||
|
||||
# This GitHub Actions file runs without ANY dependency, so works on all versions of R since R-3.0.
|
||||
|
||||
on:
|
||||
push:
|
||||
branches:
|
||||
- premaster
|
||||
- master
|
||||
- development
|
||||
- main
|
||||
pull_request:
|
||||
branches:
|
||||
- master
|
||||
- main
|
||||
schedule:
|
||||
# run a schedule everyday at 1 AM.
|
||||
# this is to check that all dependencies are still available (see R/zzz.R)
|
||||
@ -81,44 +79,34 @@ jobs:
|
||||
- {os: windows-latest, r: '3.2', allowfail: false}
|
||||
|
||||
env:
|
||||
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
|
||||
R_REMOTES_NO_ERRORS_FROM_WARNINGS: false
|
||||
RSPM: ${{ matrix.config.rspm }}
|
||||
R_REPOSITORIES: "https://cran.rstudio.com"
|
||||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
|
||||
R_KEEP_PKG_SOURCE: yes
|
||||
R_CHECK_CRAN_INCOMING_: false
|
||||
R_CHECK_FORCE_SUGGESTS_: false
|
||||
R_CHECK_DEPENDS_ONLY_: true
|
||||
R_CHECK_LENGTH_1_CONDITION_: verbose
|
||||
R_CHECK_LENGTH_1_LOGIC2_: verbose
|
||||
# during 'R CMD check', R_LIBS_USER will be overwritten, so:
|
||||
R_LIBS_USER_GH_ACTIONS: ${{ env.R_LIBS_USER }}
|
||||
R_RUN_TINYTEST: true
|
||||
|
||||
steps:
|
||||
- uses: actions/checkout@v2
|
||||
|
||||
- uses: r-lib/actions/setup-pandoc@v1
|
||||
|
||||
- uses: r-lib/actions/setup-r@v1
|
||||
with:
|
||||
r-version: ${{ matrix.config.r }}
|
||||
http-user-agent: ${{ matrix.config.http-user-agent }}
|
||||
use-public-rspm: true
|
||||
|
||||
- name: Install Linux dependencies
|
||||
if: runner.os == 'Linux'
|
||||
# update the below with sysreqs::sysreqs("DESCRIPTION") and check the "DEB" entries (for Ubuntu).
|
||||
# we don't want to depend on the sysreqs pkg here, as it requires quite a recent R version
|
||||
# as of May 2021: https://sysreqs.r-hub.io/pkg/AMR,R,cleaner,curl,dplyr,ggplot2,ggtext,knitr,microbenchmark,pillar,readxl,rmarkdown,rstudioapi,rvest,skimr,tidyr,tinytest,xml2,backports,crayon,rlang,vctrs,evaluate,highr,markdown,stringr,yaml,xfun,cli,ellipsis,fansi,lifecycle,utf8,glue,mime,magrittr,stringi,generics,R6,tibble,tidyselect,pkgconfig,purrr,digest,gtable,isoband,MASS,mgcv,scales,withr,nlme,Matrix,farver,labeling,munsell,RColorBrewer,viridisLite,lattice,colorspace,gridtext,Rcpp,RCurl,png,jpeg,bitops,cellranger,progress,rematch,hms,prettyunits,htmltools,jsonlite,tinytex,base64enc,httr,selectr,openssl,askpass,sys,repr,cpp11
|
||||
run: |
|
||||
sudo apt install -y libssl-dev pandoc pandoc-citeproc libxml2-dev libicu-dev libcurl4-openssl-dev libpng-dev libudunits2-dev
|
||||
|
||||
- name: Query dependencies
|
||||
# this will change every day (i.e. at scheduled night run of GitHub Action), so it will cache dependency updates
|
||||
run: |
|
||||
writeLines(paste0(format(Sys.Date(), "%Y%m%d"), sprintf("-R-%i.%i", getRversion()$major, getRversion()$minor)), ".github/daily-R-bundle")
|
||||
shell: Rscript {0}
|
||||
|
||||
- name: Restore cached R packages
|
||||
# this step will add the step 'Post Restore cached R packages' on a succesful run
|
||||
uses: actions/cache@v2
|
||||
- uses: r-lib/actions/setup-r-dependencies@v1
|
||||
with:
|
||||
path: ${{ env.R_LIBS_USER }}
|
||||
key: ${{ matrix.config.os }}-${{ hashFiles('.github/daily-R-bundle') }}-v4
|
||||
|
||||
- name: Unpack AMR and install R dependencies
|
||||
if: always()
|
||||
run: |
|
||||
tar -xf data-raw/AMR_latest.tar.gz
|
||||
Rscript -e "source('data-raw/_install_deps.R')"
|
||||
shell: bash
|
||||
extra-packages: rcmdcheck
|
||||
|
||||
- name: Show session info
|
||||
if: always()
|
||||
@ -128,30 +116,16 @@ jobs:
|
||||
as.data.frame(utils::installed.packages())[, "Version", drop = FALSE]
|
||||
shell: Rscript {0}
|
||||
|
||||
- name: Run R CMD check
|
||||
if: always()
|
||||
env:
|
||||
_R_CHECK_CRAN_INCOMING_: false
|
||||
_R_CHECK_FORCE_SUGGESTS_: false
|
||||
_R_CHECK_DEPENDS_ONLY_: true
|
||||
_R_CHECK_LENGTH_1_CONDITION_: verbose
|
||||
_R_CHECK_LENGTH_1_LOGIC2_: verbose
|
||||
# during 'R CMD check', R_LIBS_USER will be overwritten, so:
|
||||
R_LIBS_USER_GH_ACTIONS: ${{ env.R_LIBS_USER }}
|
||||
R_RUN_TINYTEST: true
|
||||
run: |
|
||||
R CMD check --no-manual --run-donttest --run-dontrun AMR
|
||||
shell: bash
|
||||
- uses: r-lib/actions/check-r-package@v1
|
||||
|
||||
- name: Show unit tests output
|
||||
if: always()
|
||||
run: |
|
||||
find . -name 'tinytest.Rout*' -exec cat '{}' \; || true
|
||||
run: find check -name 'tinytest.Rout*' -exec cat '{}' \; || true
|
||||
shell: bash
|
||||
|
||||
- name: Upload artifacts
|
||||
- name: Upload check results
|
||||
if: always()
|
||||
uses: actions/upload-artifact@v2
|
||||
uses: actions/upload-artifact@main
|
||||
with:
|
||||
name: ${{ matrix.config.os }}-r-${{ matrix.config.r }}-artifacts
|
||||
path: AMR.Rcheck
|
||||
path: check
|
||||
|
||||
157
.github/workflows/check.yaml.old
vendored
Normal file
157
.github/workflows/check.yaml.old
vendored
Normal file
@ -0,0 +1,157 @@
|
||||
# ==================================================================== #
|
||||
# TITLE #
|
||||
# Antimicrobial Resistance (AMR) Data Analysis for R #
|
||||
# #
|
||||
# SOURCE #
|
||||
# https://github.com/msberends/AMR #
|
||||
# #
|
||||
# LICENCE #
|
||||
# (c) 2018-2021 Berends MS, Luz CF et al. #
|
||||
# Developed at the University of Groningen, the Netherlands, in #
|
||||
# collaboration with non-profit organisations Certe Medical #
|
||||
# Diagnostics & Advice, and University Medical Center Groningen. #
|
||||
# #
|
||||
# This R package is free software; you can freely use and distribute #
|
||||
# it for both personal and commercial purposes under the terms of the #
|
||||
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
|
||||
# the Free Software Foundation. #
|
||||
# We created this package for both routine data analysis and academic #
|
||||
# research and it was publicly released in the hope that it will be #
|
||||
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
|
||||
# #
|
||||
# Visit our website for the full manual and a complete tutorial about #
|
||||
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
|
||||
# ==================================================================== #
|
||||
|
||||
# This GitHub Actions file runs without ANY dependency, so works on all versions of R since R-3.0.
|
||||
|
||||
on:
|
||||
push:
|
||||
branches:
|
||||
- premaster
|
||||
- master
|
||||
pull_request:
|
||||
branches:
|
||||
- master
|
||||
schedule:
|
||||
# run a schedule everyday at 1 AM.
|
||||
# this is to check that all dependencies are still available (see R/zzz.R)
|
||||
- cron: '0 1 * * *'
|
||||
|
||||
name: R-code-check
|
||||
|
||||
jobs:
|
||||
R-code-check:
|
||||
runs-on: ${{ matrix.config.os }}
|
||||
|
||||
continue-on-error: ${{ matrix.config.allowfail }}
|
||||
|
||||
name: ${{ matrix.config.os }} (R-${{ matrix.config.r }})
|
||||
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
config:
|
||||
# test all systems against all released versions of R >= 3.0, we support them all!
|
||||
- {os: macOS-latest, r: 'devel', allowfail: true}
|
||||
- {os: macOS-latest, r: '4.1', allowfail: false}
|
||||
- {os: macOS-latest, r: '4.0', allowfail: false}
|
||||
- {os: macOS-latest, r: '3.6', allowfail: false}
|
||||
- {os: macOS-latest, r: '3.5', allowfail: false}
|
||||
- {os: macOS-latest, r: '3.4', allowfail: false}
|
||||
- {os: macOS-latest, r: '3.3', allowfail: false}
|
||||
- {os: macOS-latest, r: '3.2', allowfail: false}
|
||||
- {os: ubuntu-20.04, r: 'devel', allowfail: true, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
|
||||
- {os: ubuntu-20.04, r: '4.1', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
|
||||
- {os: ubuntu-20.04, r: '4.0', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
|
||||
- {os: ubuntu-20.04, r: '3.6', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
|
||||
- {os: ubuntu-20.04, r: '3.5', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
|
||||
- {os: ubuntu-20.04, r: '3.4', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
|
||||
- {os: ubuntu-20.04, r: '3.3', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
|
||||
- {os: ubuntu-20.04, r: '3.2', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
|
||||
- {os: ubuntu-20.04, r: '3.1', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
|
||||
- {os: ubuntu-20.04, r: '3.0', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
|
||||
- {os: windows-latest, r: 'devel', allowfail: true}
|
||||
- {os: windows-latest, r: '4.1', allowfail: false}
|
||||
- {os: windows-latest, r: '4.0', allowfail: false}
|
||||
- {os: windows-latest, r: '3.6', allowfail: false}
|
||||
- {os: windows-latest, r: '3.5', allowfail: false}
|
||||
- {os: windows-latest, r: '3.4', allowfail: false}
|
||||
- {os: windows-latest, r: '3.3', allowfail: false}
|
||||
- {os: windows-latest, r: '3.2', allowfail: false}
|
||||
|
||||
env:
|
||||
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
|
||||
RSPM: ${{ matrix.config.rspm }}
|
||||
R_REPOSITORIES: "https://cran.rstudio.com"
|
||||
|
||||
steps:
|
||||
- uses: actions/checkout@v2
|
||||
|
||||
- uses: r-lib/actions/setup-r@v1
|
||||
with:
|
||||
r-version: ${{ matrix.config.r }}
|
||||
|
||||
- name: Install Linux dependencies
|
||||
if: runner.os == 'Linux'
|
||||
# update the below with sysreqs::sysreqs("DESCRIPTION") and check the "DEB" entries (for Ubuntu).
|
||||
# we don't want to depend on the sysreqs pkg here, as it requires quite a recent R version
|
||||
# as of May 2021: https://sysreqs.r-hub.io/pkg/AMR,R,cleaner,curl,dplyr,ggplot2,ggtext,knitr,microbenchmark,pillar,readxl,rmarkdown,rstudioapi,rvest,skimr,tidyr,tinytest,xml2,backports,crayon,rlang,vctrs,evaluate,highr,markdown,stringr,yaml,xfun,cli,ellipsis,fansi,lifecycle,utf8,glue,mime,magrittr,stringi,generics,R6,tibble,tidyselect,pkgconfig,purrr,digest,gtable,isoband,MASS,mgcv,scales,withr,nlme,Matrix,farver,labeling,munsell,RColorBrewer,viridisLite,lattice,colorspace,gridtext,Rcpp,RCurl,png,jpeg,bitops,cellranger,progress,rematch,hms,prettyunits,htmltools,jsonlite,tinytex,base64enc,httr,selectr,openssl,askpass,sys,repr,cpp11
|
||||
run: |
|
||||
sudo apt install -y libssl-dev pandoc pandoc-citeproc libxml2-dev libicu-dev libcurl4-openssl-dev libpng-dev libudunits2-dev
|
||||
|
||||
- name: Query dependencies
|
||||
# this will change every day (i.e. at scheduled night run of GitHub Action), so it will cache dependency updates
|
||||
run: |
|
||||
writeLines(paste0(format(Sys.Date(), "%Y%m%d"), sprintf("-R-%i.%i", getRversion()$major, getRversion()$minor)), ".github/daily-R-bundle")
|
||||
shell: Rscript {0}
|
||||
|
||||
- name: Restore cached R packages
|
||||
# this step will add the step 'Post Restore cached R packages' on a succesful run
|
||||
uses: actions/cache@v2
|
||||
with:
|
||||
path: ${{ env.R_LIBS_USER }}
|
||||
key: ${{ matrix.config.os }}-${{ hashFiles('.github/daily-R-bundle') }}-v4
|
||||
|
||||
- name: Unpack AMR and install R dependencies
|
||||
if: always()
|
||||
run: |
|
||||
tar -xf data-raw/AMR_latest.tar.gz
|
||||
Rscript -e "source('data-raw/_install_deps.R')"
|
||||
shell: bash
|
||||
|
||||
- name: Show session info
|
||||
if: always()
|
||||
run: |
|
||||
options(width = 100)
|
||||
utils::sessionInfo()
|
||||
as.data.frame(utils::installed.packages())[, "Version", drop = FALSE]
|
||||
shell: Rscript {0}
|
||||
|
||||
- name: Run R CMD check
|
||||
if: always()
|
||||
env:
|
||||
_R_CHECK_CRAN_INCOMING_: false
|
||||
_R_CHECK_FORCE_SUGGESTS_: false
|
||||
_R_CHECK_DEPENDS_ONLY_: true
|
||||
_R_CHECK_LENGTH_1_CONDITION_: verbose
|
||||
_R_CHECK_LENGTH_1_LOGIC2_: verbose
|
||||
# during 'R CMD check', R_LIBS_USER will be overwritten, so:
|
||||
R_LIBS_USER_GH_ACTIONS: ${{ env.R_LIBS_USER }}
|
||||
R_RUN_TINYTEST: true
|
||||
run: |
|
||||
R CMD check --no-manual --run-donttest --run-dontrun AMR
|
||||
shell: bash
|
||||
|
||||
- name: Show unit tests output
|
||||
if: always()
|
||||
run: |
|
||||
find . -name 'tinytest.Rout*' -exec cat '{}' \; || true
|
||||
shell: bash
|
||||
|
||||
- name: Upload artifacts
|
||||
if: always()
|
||||
uses: actions/upload-artifact@v2
|
||||
with:
|
||||
name: ${{ matrix.config.os }}-r-${{ matrix.config.r }}-artifacts
|
||||
path: AMR.Rcheck
|
||||
@ -1,5 +1,5 @@
|
||||
Package: AMR
|
||||
Version: 1.7.1.9040
|
||||
Version: 1.7.1.9041
|
||||
Date: 2021-09-29
|
||||
Title: Antimicrobial Resistance Data Analysis
|
||||
Description: Functions to simplify and standardise antimicrobial resistance (AMR)
|
||||
|
||||
2
NEWS.md
2
NEWS.md
@ -1,4 +1,4 @@
|
||||
# `AMR` 1.7.1.9040
|
||||
# `AMR` 1.7.1.9041
|
||||
## <small>Last updated: 29 September 2021</small>
|
||||
|
||||
### Breaking changes
|
||||
|
||||
Binary file not shown.
@ -31,7 +31,10 @@ pkg_suggests <- gsub("[^a-zA-Z0-9]+", "",
|
||||
unlist(strsplit(unlist(packageDescription("AMR",
|
||||
fields = c("Suggests", "Enhances", "LinkingTo"))),
|
||||
split = ", ?")))
|
||||
pkg_suggests <- unname(pkg_suggests[!is.na(pkg_suggests)])
|
||||
cat("################################################\n")
|
||||
cat("Packages listed in Suggests/Enhances:", paste(pkg_suggests, collapse = ", "), "\n")
|
||||
cat("################################################\n")
|
||||
|
||||
if (.Platform$OS.type != "unix") {
|
||||
# no compiling on Windows here
|
||||
@ -52,6 +55,16 @@ for (i in seq_len(length(to_install))) {
|
||||
# message = function(m) invisible(),
|
||||
warning = function(w) message(w$message),
|
||||
error = function(e) message(e$message))
|
||||
if (.Platform$OS.type != "unix" && !to_install[i] %in% rownames(utils::installed.packages())) {
|
||||
tryCatch(install.packages(to_install[i],
|
||||
type = "binary",
|
||||
repos = "https://cran.rstudio.com/",
|
||||
dependencies = c("Depends", "Imports", "LinkingTo"),
|
||||
quiet = FALSE),
|
||||
# message = function(m) invisible(),
|
||||
warning = function(w) message(w$message),
|
||||
error = function(e) message(e$message))
|
||||
}
|
||||
}
|
||||
|
||||
to_update <- as.data.frame(utils::old.packages(repos = "https://cran.rstudio.com/"), stringsAsFactors = FALSE)
|
||||
|
||||
@ -44,7 +44,7 @@
|
||||
</button>
|
||||
<span class="navbar-brand">
|
||||
<a class="navbar-link" href="../index.html">AMR (for R)</a>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9040</span>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9041</span>
|
||||
</span>
|
||||
</div>
|
||||
|
||||
|
||||
@ -92,7 +92,7 @@
|
||||
</button>
|
||||
<span class="navbar-brand">
|
||||
<a class="navbar-link" href="../index.html">AMR (for R)</a>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9040</span>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9041</span>
|
||||
</span>
|
||||
</div>
|
||||
|
||||
@ -240,9 +240,9 @@
|
||||
<small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
|
||||
</div>
|
||||
|
||||
<div id="amr-1719040" class="section level1">
|
||||
<h1 class="page-header" data-toc-text="1.7.1.9040">
|
||||
<a href="#amr-1719040" class="anchor" aria-hidden="true"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9040</h1>
|
||||
<div id="amr-1719041" class="section level1">
|
||||
<h1 class="page-header" data-toc-text="1.7.1.9041">
|
||||
<a href="#amr-1719041" class="anchor" aria-hidden="true"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9041</h1>
|
||||
<div id="last-updated-29-september-2021" class="section level2">
|
||||
<h2 class="hasAnchor">
|
||||
<a href="#last-updated-29-september-2021" class="anchor" aria-hidden="true"></a><small>Last updated: 29 September 2021</small>
|
||||
|
||||
@ -24,26 +24,26 @@
|
||||
# ==================================================================== #
|
||||
|
||||
########################################################################
|
||||
# `git_premaster.sh` takes 3 parameters: #
|
||||
# `git_development.sh` takes 3 parameters: #
|
||||
# 1. Commit message (character) [mandatory] #
|
||||
# 2. Lazy website generation (logical), with TRUE only changed #
|
||||
# files will be processed [defaults to TRUE] #
|
||||
# 3. Version number to be used in DESCRIPTION and NEWS.md #
|
||||
# [defaults to current tag and last commit number + 9000] #
|
||||
# #
|
||||
# To push new commits to the premaster branch, run: #
|
||||
# bash git_premaster.sh "commit message" #
|
||||
# To push new commits to the development branch, run: #
|
||||
# bash git_development.sh "commit message" #
|
||||
# This creates auto version numbering in DESCRIPTION and NEWS.md. #
|
||||
# #
|
||||
# After successful test checks, merge it to the master branch with: #
|
||||
# After successful test checks, merge it to the main branch with: #
|
||||
# bash git_merge.sh #
|
||||
# #
|
||||
# To prerelease a new version number, run: #
|
||||
# bash git_premaster.sh "v1.x.x" FALSE "1.x.x" #
|
||||
# bash git_development.sh "v1.x.x" FALSE "1.x.x" #
|
||||
# #
|
||||
# To only update the website, run: #
|
||||
# bash git_siteonly.sh #
|
||||
# (which is short for 'bash git_premaster.sh "website update" FALSE') #
|
||||
# (which is short for 'bash git_development.sh "website update" FALSE')#
|
||||
########################################################################
|
||||
|
||||
if [ -z "$1" ]; then
|
||||
@ -56,8 +56,8 @@ else
|
||||
lazy=$2
|
||||
fi
|
||||
|
||||
# be sure to be on premaster branch
|
||||
git checkout premaster --quiet
|
||||
# be sure to be on development branch
|
||||
git checkout development --quiet
|
||||
|
||||
echo "••••••••••••••••••••••••••••••••••••••••••••"
|
||||
echo "• Updating package date and version number •"
|
||||
@ -127,7 +127,7 @@ echo "••••••••••••••••••••"
|
||||
echo "• Building package •"
|
||||
echo "••••••••••••••••••••"
|
||||
echo "• Building 'data-raw/AMR_latest.tar.gz'..."
|
||||
Rscript -e "x <- devtools::build(path = 'data-raw', vignettes = FALSE, manual = FALSE, binary = FALSE, quiet = TRUE)"
|
||||
Rscript -e "x <- devtools::build(path = 'data-raw', vignettes = TRUE, manual = TRUE, binary = FALSE, quiet = TRUE)"
|
||||
rm data-raw/AMR_latest.tar.gz
|
||||
mv data-raw/AMR_*.tar.gz data-raw/AMR_latest.tar.gz
|
||||
|
||||
@ -193,7 +193,7 @@ git add .
|
||||
git commit -a -m "(v${new_version}) $1" --quiet
|
||||
git push --quiet
|
||||
echo "Comparison:"
|
||||
echo "https://github.com/msberends/AMR/compare/master...premaster?view=inline"
|
||||
echo "https://github.com/msberends/AMR/compare/main...development?view=inline"
|
||||
|
||||
echo
|
||||
echo "•••••••••"
|
||||
30
git_merge.sh
30
git_merge.sh
@ -24,44 +24,44 @@
|
||||
# ==================================================================== #
|
||||
|
||||
########################################################################
|
||||
# `git_premaster.sh` takes 3 parameters: #
|
||||
# `git_development.sh` takes 3 parameters: #
|
||||
# 1. Commit message (character) [mandatory] #
|
||||
# 2. Lazy website generation (logical), with TRUE only changed #
|
||||
# files will be processed [defaults to TRUE] #
|
||||
# 3. Version number to be used in DESCRIPTION and NEWS.md #
|
||||
# [defaults to current tag and last commit number + 9000] #
|
||||
# #
|
||||
# To push new commits to the premaster branch, run: #
|
||||
# bash git_premaster.sh "commit message" #
|
||||
# To push new commits to the development branch, run: #
|
||||
# bash git_development.sh "commit message" #
|
||||
# This creates auto version numbering in DESCRIPTION and NEWS.md. #
|
||||
# #
|
||||
# After successful test checks, merge it to the master branch with: #
|
||||
# After successful test checks, merge it to the main branch with: #
|
||||
# bash git_merge.sh #
|
||||
# #
|
||||
# To prerelease a new version number, run: #
|
||||
# bash git_premaster.sh "v1.x.x" FALSE "1.x.x" #
|
||||
# bash git_development.sh "v1.x.x" FALSE "1.x.x" #
|
||||
# #
|
||||
# To only update the website, run: #
|
||||
# bash git_siteonly.sh #
|
||||
# (which is short for 'bash git_premaster.sh "website update" FALSE') #
|
||||
# (which is short for 'bash git_development.sh "website update" FALSE')#
|
||||
########################################################################
|
||||
|
||||
# stash current changes
|
||||
# git stash --quiet
|
||||
|
||||
# go to master
|
||||
git checkout master --quiet
|
||||
echo "• changed branch to master"
|
||||
# go to main
|
||||
git checkout main --quiet
|
||||
echo "• changed branch to main"
|
||||
|
||||
# import everything from premaster
|
||||
git merge premaster --quiet
|
||||
# import everything from development
|
||||
git merge development --quiet
|
||||
# and send it to git
|
||||
git push --quiet
|
||||
echo "• pushed changes to master"
|
||||
echo "• pushed changes to main"
|
||||
|
||||
# return to premaster
|
||||
git checkout premaster --quiet
|
||||
echo "• changed branch back to premaster"
|
||||
# return to development
|
||||
git checkout development --quiet
|
||||
echo "• changed branch back to development"
|
||||
git status --short
|
||||
echo
|
||||
|
||||
|
||||
@ -24,35 +24,35 @@
|
||||
# ==================================================================== #
|
||||
|
||||
########################################################################
|
||||
# `git_premaster.sh` takes 3 parameters: #
|
||||
# `git_development.sh` takes 3 parameters: #
|
||||
# 1. Commit message (character) [mandatory] #
|
||||
# 2. Lazy website generation (logical), with TRUE only changed #
|
||||
# files will be processed [defaults to TRUE] #
|
||||
# 3. Version number to be used in DESCRIPTION and NEWS.md #
|
||||
# [defaults to current tag and last commit number + 9000] #
|
||||
# #
|
||||
# To push new commits to the premaster branch, run: #
|
||||
# bash git_premaster.sh "commit message" #
|
||||
# To push new commits to the development branch, run: #
|
||||
# bash git_development.sh "commit message" #
|
||||
# This creates auto version numbering in DESCRIPTION and NEWS.md. #
|
||||
# #
|
||||
# After successful test checks, merge it to the master branch with: #
|
||||
# After successful test checks, merge it to the main branch with: #
|
||||
# bash git_merge.sh #
|
||||
# #
|
||||
# To prerelease a new version number, run: #
|
||||
# bash git_premaster.sh "v1.x.x" FALSE "1.x.x" #
|
||||
# bash git_development.sh "v1.x.x" FALSE "1.x.x" #
|
||||
# #
|
||||
# To only update the website, run: #
|
||||
# bash git_siteonly.sh #
|
||||
# (which is short for 'bash git_premaster.sh "website update" FALSE') #
|
||||
# (which is short for 'bash git_development.sh "website update" FALSE')#
|
||||
########################################################################
|
||||
|
||||
bash git_premaster.sh "website update" FALSE
|
||||
bash git_development.sh "website update" FALSE
|
||||
|
||||
echo
|
||||
echo "••••••••••••••••••••••••••••••"
|
||||
echo "• Uploading to master branch •"
|
||||
echo "••••••••••••••••••••••••••••••"
|
||||
git checkout master
|
||||
git merge premaster
|
||||
echo "••••••••••••••••••••••••••••"
|
||||
echo "• Uploading to main branch •"
|
||||
echo "••••••••••••••••••••••••••••"
|
||||
git checkout main
|
||||
git merge development
|
||||
git push --quiet
|
||||
git checkout premaster
|
||||
git checkout development
|
||||
|
||||
Loading…
Reference in New Issue
Block a user