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@ -11,7 +11,7 @@ articles:
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resistance_predict: resistance_predict.html
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welcome_to_AMR: welcome_to_AMR.html
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WHONET: WHONET.html
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last_built: 2024-04-23T08:36Z
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last_built: 2024-04-23T08:59Z
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urls:
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reference: https://msberends.github.io/AMR/reference
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article: https://msberends.github.io/AMR/articles
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@ -592,19 +592,19 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 13 × 14</span></span>
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<span class="r-out co"><span class="r-pr">#></span> datetime index ab_user mo_user ab mo input</span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><dttm></span> <span style="color: #949494; font-style: italic;"><int></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><ab></span> <span style="color: #949494; font-style: italic;"><mo></span> <span style="color: #949494; font-style: italic;"><dbl></span></span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 2024-04-23 <span style="color: #949494;">08:36:55</span> 1 TOB Escherich… TOB B_[ORD]_ENTRBCTR 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 2024-04-23 <span style="color: #949494;">08:36:55</span> 1 GEN Escherich… GEN B_[ORD]_ENTRBCTR 18 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 2024-04-23 <span style="color: #949494;">08:36:54</span> 1 CIP Escherich… CIP B_[ORD]_ENTRBCTR 0.256</span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 2024-04-23 <span style="color: #949494;">08:36:54</span> 1 AMP Escherich… AMP B_[ORD]_ENTRBCTR 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 2024-04-23 <span style="color: #949494;">08:36:49</span> 1 AMX B_STRPT_P… AMX B_STRPT_PNMN 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 2024-04-23 <span style="color: #949494;">08:36:49</span> 2 AMX B_STRPT_P… AMX B_STRPT_PNMN 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 2024-04-23 <span style="color: #949494;">08:36:49</span> 3 AMX B_STRPT_P… AMX B_STRPT_PNMN 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 2024-04-23 <span style="color: #949494;">08:36:49</span> 4 AMX B_STRPT_P… AMX B_STRPT_PNMN 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 2024-04-23 <span style="color: #949494;">08:36:49</span> 1 AMX B_STRPT_P… AMX B_STRPT_PNMN 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 2024-04-23 <span style="color: #949494;">08:36:49</span> 1 TOB Escherich… TOB B_[ORD]_ENTRBCTR 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">11</span> 2024-04-23 <span style="color: #949494;">08:36:49</span> 1 GEN Escherich… GEN B_[ORD]_ENTRBCTR 18 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">12</span> 2024-04-23 <span style="color: #949494;">08:36:49</span> 1 AMP Escherich… AMP B_[ORD]_ENTRBCTR 20 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">13</span> 2024-04-23 <span style="color: #949494;">08:36:48</span> 1 ampicillin Strep pneu AMP B_STRPT_PNMN 18 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 2024-04-23 <span style="color: #949494;">08:59:51</span> 1 TOB Escherich… TOB B_[ORD]_ENTRBCTR 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 2024-04-23 <span style="color: #949494;">08:59:51</span> 1 GEN Escherich… GEN B_[ORD]_ENTRBCTR 18 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 2024-04-23 <span style="color: #949494;">08:59:51</span> 1 CIP Escherich… CIP B_[ORD]_ENTRBCTR 0.256</span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 2024-04-23 <span style="color: #949494;">08:59:51</span> 1 AMP Escherich… AMP B_[ORD]_ENTRBCTR 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 2024-04-23 <span style="color: #949494;">08:59:46</span> 1 AMX B_STRPT_P… AMX B_STRPT_PNMN 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 2024-04-23 <span style="color: #949494;">08:59:46</span> 2 AMX B_STRPT_P… AMX B_STRPT_PNMN 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 2024-04-23 <span style="color: #949494;">08:59:46</span> 3 AMX B_STRPT_P… AMX B_STRPT_PNMN 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 2024-04-23 <span style="color: #949494;">08:59:46</span> 4 AMX B_STRPT_P… AMX B_STRPT_PNMN 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 2024-04-23 <span style="color: #949494;">08:59:46</span> 1 AMX B_STRPT_P… AMX B_STRPT_PNMN 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 2024-04-23 <span style="color: #949494;">08:59:45</span> 1 TOB Escherich… TOB B_[ORD]_ENTRBCTR 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">11</span> 2024-04-23 <span style="color: #949494;">08:59:45</span> 1 GEN Escherich… GEN B_[ORD]_ENTRBCTR 18 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">12</span> 2024-04-23 <span style="color: #949494;">08:59:45</span> 1 AMP Escherich… AMP B_[ORD]_ENTRBCTR 20 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">13</span> 2024-04-23 <span style="color: #949494;">08:59:45</span> 1 ampicillin Strep pneu AMP B_STRPT_PNMN 18 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 7 more variables: outcome <sir>, method <chr>, breakpoint_S_R <chr>,</span></span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># guideline <chr>, host <chr>, ref_table <chr>, uti <lgl></span></span>
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<span class="r-in"><span></span></span>
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