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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Random MIC Values/Disk Zones/SIR Generation — random • AMR (for R)</title><!-- favicons --><link rel="icon" type="image/png" sizes="96x96" href="../favicon-96x96.png"><link rel="icon" type="”image/svg+xml”" href="../favicon.svg"><link rel="apple-touch-icon" sizes="180x180" href="../apple-touch-icon.png"><link rel="icon" sizes="any" href="../favicon.ico"><link rel="manifest" href="../site.webmanifest"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Lato-0.4.10/font.css" rel="stylesheet"><link href="../deps/Fira_Code-0.4.10/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><script src="../extra.js"></script><meta property="og:title" content="Random MIC Values/Disk Zones/SIR Generation — random"><meta name="description" content="These functions can be used for generating random MIC values and disk diffusion diameters, for AMR data analysis practice. By providing a microorganism and antimicrobial drug, the generated results will reflect reality as much as possible."><meta property="og:description" content="These functions can be used for generating random MIC values and disk diffusion diameters, for AMR data analysis practice. By providing a microorganism and antimicrobial drug, the generated results will reflect reality as much as possible."><meta property="og:image" content="https://amr-for-r.org/logo.svg"><link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/katex@0.16.11/dist/katex.min.css" integrity="sha384-nB0miv6/jRmo5UMMR1wu3Gz6NLsoTkbqJghGIsx//Rlm+ZU03BU6SQNC66uf4l5+" crossorigin="anonymous"><script defer src="https://cdn.jsdelivr.net/npm/katex@0.16.11/dist/katex.min.js" integrity="sha384-7zkQWkzuo3B5mTepMUcHkMB5jZaolc2xDwL6VFqjFALcbeS9Ggm/Yr2r3Dy4lfFg" crossorigin="anonymous"></script><script defer src="https://cdn.jsdelivr.net/npm/katex@0.16.11/dist/contrib/auto-render.min.js" integrity="sha384-43gviWU0YVjaDtb/GhzOouOXtZMP/7XUzwPTstBeZFe/+rCMvRwr4yROQP43s0Xk" crossorigin="anonymous" onload="renderMathInElement(document.body);"></script></head><body>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9259</small>
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.005 0.25 1 0.0625 128 0.01 1 4 128 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] <=0.005 0.25 0.5 0.125 0.01 0.25 2 8 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.125 0.5 >=256 >=256 >=256 0.25 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 8 1 4 0.01 0.002 64 <=0.001 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 1 >=256 >=256 2 0.025 0.01 64 4 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.025 8 0.005 >=256 8 <=0.001 8 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 24 14 46 41 9 8 22 41 50 38 48 48 28 43 47 30 13 13 38 14 48 47 21 6 22</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 7 45 30 48 23 12 45 40 47 9 20 20 23 9 32 20 50 26 42 30 47 11 24 34 46</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I I I I I I S R R S I S S R I R R R I S S R R I R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I R I S S I S S I S S R I S I I R S R S R R S I I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 4 1 0.0625 0.005 0.002 2 0.002 >=128 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.125 0.5 0.002 0.01 0.001 0.002 0.01 32 64 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.01 1 4 1 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 0.0625 16 0.005 0.01 0.25 0.5 4 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.125 0.125 0.25 >=64 >=64 2 0.025 0.0625 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 2 0.125 0.01 8 <=0.001 0.0625 0.5 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=1 4 4 2 32 4 32 16 <=1 32 8 8 32 8 4 32 <=1 <=1 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 8 32 8 16 4 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 8 1 0.5 4 4 2 4 8 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 8 <=0.25 16 2 2 2 16 4 0.5 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 8 <=0.25 2 8 1 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 >=16 0.125 >=16 2 0.5 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] 0.125 0.5 <=0.0625 0.25 0.25 0.5 >=16 >=16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] 1 >=16 8 0.25 8 0.25 >=16 >=16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 1 0.25 >=8 2 1 <=0.125 0.25 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 2 1 4 0.5 <=0.125 2 2 <=0.125 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 >=8 2 0.5 2 >=8 >=8 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 42 36 49 13 45 50 37 33 30 14 23 15 30 9 21 47 32 17 48 47 24 23 14 27 48</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 39 14 27 41 44 37 46 17 16 13 23 31 19 22 42 15 40 44 40 40 30 34 34 43 16</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 16 13 16 13 11 17 12 16 14 14 15 11 16 12 13 14 12 13 12 15 12 12 13 17</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 15 17 17 12 13 16 14 15 12 15 16 11 15 11 17 15 13 14 11 13 17 11 17 16</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 20 25 24 21 22 21 16 15 18 18 25 19 26 27 26 21 21 19 25 15 22 19 24 26</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 26 21 26 20 22 25 18 26 27 18 25 17 23 21 16 20 23 21 15 21 22 20 19 17</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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