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(v1.4.0.9048) AmpC de-repressed cephalo-resistant mutants

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dr. M.S. (Matthijs) Berends
2020-12-27 14:23:11 +01:00
parent 8b52f9b1be
commit ed198916bf
24 changed files with 93 additions and 41 deletions
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docs/news/index.html
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@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9047</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.4.0.9048</span>
</span>
</div>
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<small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div>
<div id="amr-1409047" class="section level1">
<h1 class="page-header" data-toc-text="1.4.0.9047">
<a href="#amr-1409047" class="anchor"></a>AMR 1.4.0.9047<small> Unreleased </small>
<div id="amr-1409048" class="section level1">
<h1 class="page-header" data-toc-text="1.4.0.9048">
<a href="#amr-1409048" class="anchor"></a>AMR 1.4.0.9048<small> Unreleased </small>
</h1>
<div id="last-updated-27-december-2020" class="section level2">
<h2 class="hasAnchor">
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<h3 class="hasAnchor">
<a href="#changed" class="anchor"></a>Changed</h3>
<ul>
<li><p>New argument <code>ampc_cephalosporin_resistance</code> in <code><a href="../reference/eucast_rules.html">eucast_rules()</a></code> to correct for AmpC de-repressed cephalosporin-resistant mutants</p></li>
<li>
<p>Interpretation of antimicrobial resistance - <code><a href="../reference/as.rsi.html">as.rsi()</a></code>:</p>
<ul>
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<ul>
<li>All messages and warnings thrown by this package now break sentences on whole words</li>
<li>More extensive unit tests</li>
<li>Internal calls to <code><a href="https://rdrr.io/r/base/options.html">options()</a></code> were all removed in favour of a new internal environment <code>mo_env</code>
<li>Internal calls to <code><a href="https://rdrr.io/r/base/options.html">options()</a></code> were all removed in favour of a new internal environment <code>pkg_env</code>
</li>
<li>Added Dr. Rogier Schade as contributor</li>
</ul>
</div>
</div>