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(v1.4.0.9048) AmpC de-repressed cephalo-resistant mutants

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dr. M.S. (Matthijs) Berends
2020-12-27 14:23:11 +01:00
parent 8b52f9b1be
commit ed198916bf
24 changed files with 93 additions and 41 deletions
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20
tests/testthat/test-eucast_rules.R
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@ -118,4 +118,24 @@ test_that("EUCAST rules work", {
# check verbose output
expect_output(suppressWarnings(eucast_rules(example_isolates, verbose = TRUE, rules = "all", info = TRUE)))
# AmpC de-repressed cephalo mutants
expect_identical(
eucast_rules(data.frame(mo = c("Escherichia coli", "Enterobacter cloacae"),
cefotax = as.rsi(c("S", "S"))),
ampc_derepressed_cephalosporins = "R",
info = FALSE)$cefotax,
as.rsi(c("S", "R")))
expect_identical(
eucast_rules(data.frame(mo = c("Escherichia coli", "Enterobacter cloacae"),
cefotax = as.rsi(c("S", "S"))),
ampc_derepressed_cephalosporins = NA,
info = FALSE)$cefotax,
as.rsi(c("S", NA)))
expect_identical(
eucast_rules(data.frame(mo = c("Escherichia coli", "Enterobacter cloacae"),
cefotax = as.rsi(c("S", "S"))),
ampc_derepressed_cephalosporins = NULL,
info = FALSE)$cefotax,
as.rsi(c("S", "S")))
})