mirror of
https://github.com/msberends/AMR.git
synced 2024-12-25 07:26:12 +01:00
language
This commit is contained in:
parent
2c798547bf
commit
f01d62ee5d
@ -30,7 +30,7 @@ image: debian:buster-slim
|
||||
before_script:
|
||||
- apt-get update -qq
|
||||
# install dependencies for packages
|
||||
- apt-get install -qq locales libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev pandoc r-base
|
||||
- apt-get install -qq locales libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev pandoc pandoc-citeproc r-base
|
||||
# set R system language
|
||||
- echo "LC_ALL=en_US.UTF-8" >> /etc/environment
|
||||
- echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen
|
||||
@ -42,11 +42,9 @@ before_script:
|
||||
- echo 'R_LIBS_USER="installed_deps"' >> .Renviron
|
||||
- echo 'R_LIBS_SITE="installed_deps"' >> .Renviron
|
||||
- echo 'LANGUAGE="en_US.utf8"' >> .Renviron
|
||||
- echo 'LANG="en_US.utf8"' >> .Renviron
|
||||
- echo 'LANGUAGE="en_US.utf8"' > ~/.Renviron
|
||||
#- Rscript -e '.libPaths()'
|
||||
# install missing and outdated packages
|
||||
- Rscript -e 'Sys.setlocale("LC_ALL", "en_US.UTF-8"); sessionInfo()'
|
||||
- Rscript -e 'sessionInfo()'
|
||||
- Rscript -e 'source(".gitlab-ci.R"); gl_update_pkg_all(repos = "https://cran.rstudio.com", quiet = TRUE, install_pkgdown = TRUE)'
|
||||
|
||||
@ -60,14 +58,12 @@ R 3:
|
||||
allow_failure: true
|
||||
script:
|
||||
# remove vignettes folder and get VignetteBuilder field out of DESCRIPTION file
|
||||
# - rm -rf vignettes
|
||||
# - Rscript -e 'd <- read.dcf("DESCRIPTION"); d[, colnames(d) == "VignetteBuilder"] <- NA; write.dcf(d, "DESCRIPTION")'
|
||||
- rm -rf vignettes
|
||||
- Rscript -e 'd <- read.dcf("DESCRIPTION"); d[, colnames(d) == "VignetteBuilder"] <- NA; write.dcf(d, "DESCRIPTION")'
|
||||
# build package
|
||||
# - R CMD build . --no-build-vignettes --no-manual
|
||||
- R CMD build . --no-manual
|
||||
- R CMD build . --no-build-vignettes --no-manual
|
||||
- PKG_FILE_NAME=$(ls -1t *.tar.gz | head -n 1)
|
||||
# - R CMD check "${PKG_FILE_NAME}" --no-build-vignettes --no-manual --as-cran
|
||||
- R CMD check "${PKG_FILE_NAME}" --no-manual --as-cran
|
||||
- R CMD check "${PKG_FILE_NAME}" --no-build-vignettes --no-manual --as-cran
|
||||
artifacts:
|
||||
paths:
|
||||
- '*.Rcheck/*'
|
||||
|
@ -1,6 +1,6 @@
|
||||
Package: AMR
|
||||
Version: 0.5.0.9009
|
||||
Date: 2019-01-02
|
||||
Date: 2019-01-05
|
||||
Title: Antimicrobial Resistance Analysis
|
||||
Authors@R: c(
|
||||
person(
|
||||
|
Loading…
Reference in New Issue
Block a user