P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2024-12-26 08:06:12 +01:00
Code Releases Activity

(v1.1.0.9018) as.ab() update, added ab_url()

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends 2020-05-22 20:29:55 +02:00
parent e467cc103e
commit f5ff2e6634
13 changed files with 21 additions and 14 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
DESCRIPTION
View File

@ -1,5 +1,5 @@
Package: AMR Package: AMR
Version: 1.1.0.9017 Version: 1.1.0.9018
Date: 2020-05-22 Date: 2020-05-22
Title: Antimicrobial Resistance Analysis Title: Antimicrobial Resistance Analysis
Authors@R: c( Authors@R: c(

2
NEWS.md
View File

@ -1,4 +1,4 @@
# AMR 1.1.0.9017 # AMR 1.1.0.9018
## <small>Last updated: 22-May-2020</small> ## <small>Last updated: 22-May-2020</small>
### Breaking ### Breaking

1
R/ab_property.R
View File

@ -29,6 +29,7 @@
#' @param language language of the returned text, defaults to system language (see [get_locale()]) and can also be set with `getOption("AMR_locale")`. Use `language = NULL` or `language = ""` to prevent translation. #' @param language language of the returned text, defaults to system language (see [get_locale()]) and can also be set with `getOption("AMR_locale")`. Use `language = NULL` or `language = ""` to prevent translation.
#' @param administration way of administration, either `"oral"` or `"iv"` #' @param administration way of administration, either `"oral"` or `"iv"`
#' @param units a logical to indicate whether the units instead of the DDDs itself must be returned, see Examples #' @param units a logical to indicate whether the units instead of the DDDs itself must be returned, see Examples
#' @param open browse the URL using [utils::browseURL()]
#' @param ... other parameters passed on to [as.ab()] #' @param ... other parameters passed on to [as.ab()]
#' @details All output will be [translate]d where possible. #' @details All output will be [translate]d where possible.
#' #'

2
docs/404.html
View File

@ -81,7 +81,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="https://msberends.gitlab.io/AMR/index.html">AMR (for R)</a> <a class="navbar-link" href="https://msberends.gitlab.io/AMR/index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.1.0.9017</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.1.0.9018</span>
</span> </span>
</div> </div>

2
docs/LICENSE-text.html
View File

@ -81,7 +81,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a> <a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.1.0.9017</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.1.0.9018</span>
</span> </span>
</div> </div>

2
docs/articles/index.html
View File

@ -81,7 +81,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.1.0.9017</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.1.0.9018</span>
</span> </span>
</div> </div>

2
docs/authors.html
View File

@ -81,7 +81,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a> <a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.1.0.9017</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.1.0.9018</span>
</span> </span>
</div> </div>

2
docs/index.html
View File

@ -43,7 +43,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a> <a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.1.0.9017</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.1.0.9018</span>
</span> </span>
</div> </div>

8
docs/news/index.html
View File

@ -81,7 +81,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.1.0.9017</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.1.0.9018</span>
</span> </span>
</div> </div>
@ -229,9 +229,9 @@
<small>Source: <a href='https://gitlab.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small> <small>Source: <a href='https://gitlab.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div> </div>
<div id="amr-1-1-0-9017" class="section level1"> <div id="amr-1-1-0-9018" class="section level1">
<h1 class="page-header" data-toc-text="1.1.0.9017"> <h1 class="page-header" data-toc-text="1.1.0.9018">
<a href="#amr-1-1-0-9017" class="anchor"></a>AMR 1.1.0.9017<small> Unreleased </small> <a href="#amr-1-1-0-9018" class="anchor"></a>AMR 1.1.0.9018<small> Unreleased </small>
</h1> </h1>
<div id="last-updated-22-may-2020" class="section level2"> <div id="last-updated-22-may-2020" class="section level2">
<h2 class="hasAnchor"> <h2 class="hasAnchor">

2
docs/pkgdown.yml
View File

@ -10,7 +10,7 @@ articles:
WHONET: WHONET.html WHONET: WHONET.html
benchmarks: benchmarks.html benchmarks: benchmarks.html
resistance_predict: resistance_predict.html resistance_predict: resistance_predict.html
last_built: 2020-05-22T18:14Z last_built: 2020-05-22T18:29Z
urls: urls:
reference: https://msberends.gitlab.io/AMR/reference reference: https://msberends.gitlab.io/AMR/reference
article: https://msberends.gitlab.io/AMR/articles article: https://msberends.gitlab.io/AMR/articles

6
docs/reference/ab_property.html
View File

@ -82,7 +82,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.1.0.9017</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.1.0.9018</span>
</span> </span>
</div> </div>
@ -288,6 +288,10 @@
<th>units</th> <th>units</th>
<td><p>a logical to indicate whether the units instead of the DDDs itself must be returned, see Examples</p></td> <td><p>a logical to indicate whether the units instead of the DDDs itself must be returned, see Examples</p></td>
</tr> </tr>
<tr>
<th>open</th>
<td><p>browse the URL using <code><a href='https://rdrr.io/r/utils/browseURL.html'>utils::browseURL()</a></code></p></td>
</tr>
<tr> <tr>
<th>property</th> <th>property</th>
<td><p>one of the column names of one of the <a href='antibiotics.html'>antibiotics</a> data set</p></td> <td><p>one of the column names of one of the <a href='antibiotics.html'>antibiotics</a> data set</p></td>

2
docs/reference/index.html
View File

@ -81,7 +81,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.1.0.9017</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.1.0.9018</span>
</span> </span>
</div> </div>

2
man/ab_property.Rd
View File

@ -56,6 +56,8 @@ ab_property(x, property = "name", language = get_locale(), ...)
\item{units}{a logical to indicate whether the units instead of the DDDs itself must be returned, see Examples} \item{units}{a logical to indicate whether the units instead of the DDDs itself must be returned, see Examples}
\item{open}{browse the URL using \code{\link[utils:browseURL]{utils::browseURL()}}}
\item{property}{one of the column names of one of the \link{antibiotics} data set} \item{property}{one of the column names of one of the \link{antibiotics} data set}
} }
\value{ \value{