This commit is contained in:
dr. M.S. (Matthijs) Berends 2019-05-11 23:30:10 +02:00
parent 68cc7ef0d0
commit fcc77164e9
11 changed files with 223 additions and 324 deletions

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@ -1,6 +1,6 @@
Package: AMR
Version: 0.6.1.9003
Date: 2019-05-10
Date: 2019-05-11
Title: Antimicrobial Resistance Analysis
Authors@R: c(
person(

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@ -26,7 +26,7 @@
#'
#' \code{system.file("translations.tsv", package = "AMR")}
#'
#' This file will be read by all functions where a translated output can be desired, like all \code{\link{mo_property}} functions (\code{\link{mo_fullname}}, \code{\link{mo_type}}, etc.). Please suggest your own translations \href{https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation suggestion}{by creating a new issue on our repository}.
#' This file will be read by all functions where a translated output can be desired, like all \code{\link{mo_property}} functions (\code{\link{mo_fullname}}, \code{\link{mo_type}}, etc.). Please suggest your own translations \href{https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation\%20suggestion}{by creating a new issue on our repository}.
#'
#' The system language will be used at default, if supported, using \code{\link{get_locale}}. The system language can be overwritten with \code{\link{getOption}("AMR_locale")}.
#' @inheritSection AMR Read more on our website!

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@ -321,15 +321,12 @@ mdro <- function(x,
& !ab_missing(CIP)
& !ab_missing(CAZ)
& !ab_missing(TZP) ) {
tbl_ <- tbl_ %>% mutate(
psae = 0,
psae = ifelse(MEM == "R" | IPM == "R", psae + 1, psae),
psae = ifelse(GEN == "R" & TOB == "R", psae + 1, psae),
psae = ifelse(CIP == "R", psae + 1, psae),
psae = ifelse(CAZ == "R", psae + 1, psae),
psae = ifelse(TZP == "R", psae + 1, psae),
psae = ifelse(is.na(psae), 0, psae)
)
tbl_$psae <- 0
tbl_[which(tbl_[, MEM] == "R" | tbl_[, IPM] == "R"), "psae"] <- 1 + tbl_[which(tbl_[, MEM] == "R" | tbl_[, IPM] == "R"), "psae"]
tbl_[which(tbl_[, GEN] == "R" & tbl_[, TOB] == "R"), "psae"] <- 1 + tbl_[which(tbl_[, GEN] == "R" & tbl_[, TOB] == "R"), "psae"]
tbl_[which(tbl_[, CIP] == "R"), "psae"] <- 1 + tbl_[which(tbl_[, CIP] == "R"), "psae"]
tbl_[which(tbl_[, CAZ] == "R"), "psae"] <- 1 + tbl_[which(tbl_[, CAZ] == "R"), "psae"]
tbl_[which(tbl_[, TZP] == "R"), "psae"] <- 1 + tbl_[which(tbl_[, TZP] == "R"), "psae"]
} else {
tbl_$psae <- 0
}

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@ -33,8 +33,8 @@
#' @name WHOCC
#' @rdname WHOCC
#' @examples
#' as.atc("meropenem")
#' atc_name("J01DH02")
#' as.ab("meropenem")
#' ab_name("J01DH02")
#'
#' atc_tradenames("flucloxacillin")
#' ab_tradenames("flucloxacillin")
NULL

Binary file not shown.

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@ -80,7 +80,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9003</span>
</span>
</div>
@ -145,7 +145,7 @@
</a>
</li>
<li>
<a href="../reference/atc_property.html">
<a href="../reference/ab_property.html">
<span class="fa fa-capsules"></span>
Get properties of an antibiotic
@ -258,10 +258,10 @@ This package contains <strong>all ~500 antimicrobial drugs</strong> and their An
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><span class='co'># NOT RUN {</span>
<span class='fu'><a href='as.atc.html'>as.atc</a></span>(<span class='st'>"meropenem"</span>)
<span class='fu'><a href='atc_property.html'>atc_name</a></span>(<span class='st'>"J01DH02"</span>)
<span class='fu'><a href='as.ab.html'>as.ab</a></span>(<span class='st'>"meropenem"</span>)
<span class='fu'><a href='ab_property.html'>ab_name</a></span>(<span class='st'>"J01DH02"</span>)
<span class='fu'><a href='atc_property.html'>atc_tradenames</a></span>(<span class='st'>"flucloxacillin"</span>)
<span class='fu'><a href='ab_property.html'>ab_tradenames</a></span>(<span class='st'>"flucloxacillin"</span>)
<span class='co'># }</span></pre>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="sidebar">

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@ -247,7 +247,7 @@
<p>Strings will be translated to foreign languages if they are defined in a local translation file. This file comes with this package and can be found when running:</p>
<p><code><a href='https://www.rdocumentation.org/packages/base/topics/system.file'>system.file("translations.tsv", package = "AMR")</a></code></p>
<p>This file will be read by all functions where a translated output can be desired, like all <code><a href='mo_property.html'>mo_property</a></code> functions (<code><a href='mo_property.html'>mo_fullname</a></code>, <code><a href='mo_property.html'>mo_type</a></code>, etc.). Please suggest your own translations <a href='https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation suggestion'>by creating a new issue on our repository</a>.</p>
<p>This file will be read by all functions where a translated output can be desired, like all <code><a href='mo_property.html'>mo_property</a></code> functions (<code><a href='mo_property.html'>mo_fullname</a></code>, <code><a href='mo_property.html'>mo_type</a></code>, etc.). Please suggest your own translations <a href='https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation%20suggestion'>by creating a new issue on our repository</a>.</p>
<p>The system language will be used at default, if supported, using <code>get_locale</code>. The system language can be overwritten with <code><a href='https://www.rdocumentation.org/packages/base/topics/options'>getOption</a>("AMR_locale")</code>.</p>
<h2 class="hasAnchor" id="read-more-on-our-website-"><a class="anchor" href="#read-more-on-our-website-"></a>Read more on our website!</h2>

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@ -154,303 +154,204 @@ pt vegetative vegetativo FALSE FALSE
pt ([([ ]*?)group \\1grupo FALSE FALSE
pt ([([ ]*?)Group \\1Grupo FALSE FALSE
nl 4-aminosalicylic acid aminosalicylzuur
nl adefovir dipivoxil adefovir
nl aldesulfone sodium aldesulfon
nl amikacin amikacine
nl amoxicillin amoxicilline
nl amoxicillin and beta-lactamase inhibitor amoxicilline met enzymremmer
nl amphotericin B amfotericine B
nl ampicillin ampicilline
nl ampicillin and beta-lactamase inhibitor ampicilline met enzymremmer
nl ampicillin, combinations ampicilline, combinatiepreparaten
nl anidulafungin anidulafungine
nl anthrax antigen anthrax-antigeen
nl anti-d (rh) immunoglobulin rhesus(d)immunoglobuline
nl azidocillin azidocilline
nl azithromycin azitromycine
nl azlocillin azlocilline
nl bacampicillin bacampicilline
nl bacitracin bacitracine
nl benzathine benzylpenicillin benzylpenicillinebenzathine
nl benzathine phenoxymethylpenicillin fenoxymethylpenicillinebenzathine
nl benzylpenicillin benzylpenicilline
nl botulinum antitoxin serum tegen botulisme
nl brucella antigen brucella-antigeen
nl calcium aminosalicylate aminosalicylzuur
nl capreomycin capreomycine
nl carbenicillin carbenicilline
nl carindacillin carindacilline
nl caspofungin caspofungine
nl cefacetrile cefacetril
nl cefalexin cefalexine
nl cefalotin cefalotine
nl cefamandole cefamandol
nl cefapirin cefapirine
nl cefazedone cefazedon
nl cefazolin cefazoline
nl cefepime cefepim
nl cefixime cefixim
nl cefmenoxime cefmenoxim
nl cefmetazole cefmetazol
nl cefodizime cefodizim
nl cefonicid cefonicide
nl cefoperazone cefoperazon
nl cefoperazone and beta-lactamase inhibitor cefoperazon combinatiepreparaten
nl cefotaxime cefotaxim
nl cefoxitin cefoxitine
nl cefpirome cefpirom
nl cefpodoxime cefpodoxim
nl cefsulodin cefsulodine
nl ceftazidime ceftazidim
nl ceftezole ceftezol
nl ceftizoxime ceftizoxim
nl ceftriaxone ceftriaxon
nl ceftriaxone, combinations ceftriaxon, combinatiepreparaten
nl cefuroxime cefuroxim
nl cefuroxime and metronidazole cefuroxim met andere antibacteriele middelen
nl chloramphenicol chlooramfenicol
nl chlortetracycline chloortetracycline
nl cholera, combinations with typhoid vaccine, inactivated, whole cell choleravaccin met tyfusvaccin, geinactiveerd, hele cel
nl cholera, inactivated, whole cell cholera, geinactiveerd, hele cel
nl cholera, live attenuated cholera, levend verzwakt
nl cinoxacin cinoxacine
nl ciprofloxacin ciprofloxacine
nl clarithromycin claritromycine
nl 4-aminosalicylic acid 4-aminosalicylzuur
nl Adefovir dipivoxil Adefovir
nl Aldesulfone sodium Aldesulfon
nl Amikacin Amikacine
nl Amoxicillin Amoxicilline
nl Amoxicillin/beta-lactamase inhibitor Amoxicilline/enzymremmer
nl Amphotericin B Amfotericine B
nl Ampicillin Ampicilline
nl Ampicillin/beta-lactamase inhibitor Ampicilline/enzymremmer
nl Anidulafungin Anidulafungine
nl Azidocillin Azidocilline
nl Azithromycin Azitromycine
nl Azlocillin Azlocilline
nl Bacampicillin Bacampicilline
nl Bacitracin Bacitracine
nl Benzathine benzylpenicillin Benzylpenicillinebenzathine
nl Benzathine phenoxymethylpenicillin Fenoxymethylpenicillinebenzathine
nl Benzylpenicillin Benzylpenicilline
nl Calcium aminosalicylate Aminosalicylzuur
nl Capreomycin Capreomycine
nl Carbenicillin Carbenicilline
nl Carindacillin Carindacilline
nl Caspofungin Caspofungine
nl Cefacetrile Cefacetril
nl Cefalexin Cefalexine
nl Cefalotin Cefalotine
nl Cefamandole Cefamandol
nl Cefapirin Cefapirine
nl Cefazedone Cefazedon
nl Cefazolin Cefazoline
nl Cefepime Cefepim
nl Cefixime Cefixim
nl Cefmenoxime Cefmenoxim
nl Cefmetazole Cefmetazol
nl Cefodizime Cefodizim
nl Cefonicid Cefonicide
nl Cefoperazone Cefoperazon
nl Cefoperazone/beta-lactamase inhibitor Cefoperazon combinatiepreparaten
nl Cefotaxime Cefotaxim
nl Cefoxitin Cefoxitine
nl Cefpirome Cefpirom
nl Cefpodoxime Cefpodoxim
nl Cefsulodin Cefsulodine
nl Ceftazidime Ceftazidim
nl Ceftezole Ceftezol
nl Ceftizoxime Ceftizoxim
nl Ceftriaxone Ceftriaxon
nl Cefuroxime Cefuroxim
nl Cefuroxime/metronidazole Cefuroxim/andere antibacteriele middelen
nl Chloramphenicol Chlooramfenicol
nl Chlortetracycline Chloortetracycline
nl Cinoxacin Cinoxacine
nl Ciprofloxacin Ciprofloxacine
nl Clarithromycin Claritromycine
nl Clavulanic acid Clavulaanzuur
nl clavulanic acid clavulaanzuur
nl clindamycin clindamycine
nl clometocillin clometocilline
nl clotrimazole clotrimazol
nl cloxacillin cloxacilline
nl colistin colistine
nl combinations combinatiepreparaten
nl combinations combinatiepreparaten
nl combinations combinatiepreparaten
nl combinations combinatiepreparaten
nl combinations combinatiepreparaten
nl combinations combinatiepreparaten
nl combinations combinatiepreparaten
nl combinations of penicillins combinatiepreparaten
nl combinations of tetracyclines tetracycline combinatiepreparaten
nl cytomegalovirus immunoglobulin cytomegalie-immunoglobuline
nl dapsone dapson
nl daptomycin daptomycine
nl dibekacin dibekacine
nl dicloxacillin dicloxacilline
nl diphtheria antitoxin serum tegen difterie
nl diphtheria immunoglobulin difterie-immunoglobuline
nl diphtheria toxoid difterietoxoide
nl diphtheria-hemophilus influenzae b-pertussis-poliomyelitis-tetanus difterie-haemophilus-kinkhoest-poliomyelitis-tetanus
nl diphtheria-hemophilus influenzae b-pertussis-poliomyelitis-tetanus-hepatitis B difterie-haemophilus-kinkhoest-polio-tetanus-hepatitis B
nl diphtheria-hemophilus influenzae b-pertussis-tetanus-hepatitis B difterie-haemophilus-kinkhoest-tetanus-hepatitis B
nl diphtheria-hepatitis b-pertussis-tetanus difterie-hepatitis b-kinkhoest-tetanus
nl diphtheria-hepatitis b-tetanus difterie-hepatitis b-tetanus
nl diphtheria-pertussis-poliomyelitis-tetanus difterie-kinkhoest-poliomyelitis-tetanus
nl diphtheria-pertussis-poliomyelitis-tetanus-hepatitis B difterie-kinkhoest-poliomyelitis-tetanus-hepatitis B
nl diphtheria-poliomyelitis-tetanus difterie-poliomyelitis-tetanus
nl diphtheria-rubella-tetanus difterie-rubella-tetanus
nl dirithromycin diritromycine
nl econazole econazol
nl encephalitis, japanese, inactivated, whole virus japanse-encefalitis, geinactiveerd, intact virus
nl encephalitis, tick borne immunoglobulin teken-encephalitis-immunoglobuline
nl encephalitis, tick borne, inactivated, whole virus tekenencefalitis, geinactiveerd, intact virus
nl enoxacin enoxacine
nl epicillin epicilline
nl erythromycin erytromycine
nl ethambutol and isoniazid ethambutol met isoniazide
nl fleroxacin fleroxacine
nl flucloxacillin flucloxacilline
nl fluconazole fluconazol
nl flucytosine fluorocytosine
nl flurithromycin fluritromycine
nl fosfomycin fosfomycine
nl fusidic acid fusidinezuur
nl gas-gangrene sera serum tegen gasgangreen
nl gatifloxacin gatifloxacine
nl gemifloxacin gemifloxacine
nl gentamicin gentamicine
nl grepafloxacin grepafloxacine
nl hachimycin hachimycine
nl hemophilus influenzae B and hepatitis B haemophilus influenzae b-hepatitis B
nl hemophilus influenzae B and poliomyelitis haemophilus influenzae b-poliomyelitis
nl hemophilus influenzae B, combinations with pertussis and toxoids haemophilus influenzae B met kinkhoest en toxoiden
nl hemophilus influenzae B, combinations with toxoids haemophilus influenzae B met toxoiden
nl hemophilus influenzae B, purified antigen conjugated haemophilus influenzae B, gezuiverd geconjugeerd antigeen
nl hepatitis A immunoglobulin hepatitis a-immunoglobuline
nl hepatitis A, inactivated, whole virus hepatitis A, geinactiveerd, intact virus
nl hepatitis B immunoglobulin hepatitis b-immunoglobuline
nl hepatitis B, purified antigen hepatitis B, gezuiverd antigeen
nl hetacillin hetacilline
nl imipenem and cilastatin imipenem met enzymremmer
nl immunoglobulins, normal human, for extravascular adm, immunoglobuline, normaal, extravasculair
nl immunoglobulins, normal human, for intravascular adm, immunoglobuline, normaal, intravasculair
nl influenza, inactivated, split virus or surface antigen influenza, gezuiverd antigeen
nl influenza, inactivated, whole virus influenza, geinactiveerd, intact virus
nl inosine pranobex inosiplex
nl isepamicin isepamicine
nl isoconazole isoconazol
nl isoniazid isoniazide
nl isoniazid, combinations isoniazide, combinatiepreparaten
nl itraconazole itraconazol
nl josamycin josamycine
nl kanamycin kanamycine
nl ketoconazole ketoconazol
nl levofloxacin levofloxacine
nl lincomycin lincomycine
nl lomefloxacin lomefloxacine
nl lysozyme lysozym
nl mandelic acid amandelzuur
nl measles immunoglobulin mazelenimmunoglobuline
nl measles, combinations with mumps and rubella, live attenuated mazelen met bof en rubella, levend verzwakt
nl measles, combinations with mumps, live attenuated mazelen met bof, levend verzwakt
nl measles, combinations with mumps, rubella and varicella, live attenuated mazelen met bof, rubella en varicella, levend verzwakt
nl measles, combinations with rubella, live attenuated mazelen met rubella, levend verzwakt
nl measles, live attenuated mazelen, levend verzwakt
nl meningococcus A, purified polysaccharides antigen meningokok A, gezuiverd polysaccharidenantigeen
nl meningococcus A,c, bivalent purified polysaccharides antigen meningokok, 2 typen, gezuiverd polysaccharidenantigeen
nl meningococcus A,c,y,w-135, tetravalent purified polysaccharides antigen meningokok, 4 typen, gezuiverd polysaccharidenantigeen
nl meningococcus B, outer membrane vesicle vaccine meningokok B, buitenmembraanvaccin
nl meningococcus C, purified polysaccharides antigen conjugated meningokok C, gezuiverd saccharidenantigeen geconjugeerd
nl metampicillin metampicilline
nl meticillin meticilline
nl metisazone metisazon
nl metronidazole metronidazol
nl mezlocillin mezlocilline
nl micafungin micafungine
nl miconazole miconazol
nl midecamycin midecamycine
nl miocamycin miocamycine
nl moxifloxacin moxifloxacine
nl mumps immunoglobulin bofimmunoglobuline
nl mumps, live attenuated bof, levend verzwakt
nl mupirocin mupirocine
nl nalidixic acid nalidixinezuur
nl neomycin neomycine
nl netilmicin netilmicine
nl nitrofurantoin nitrofurantoine
nl norfloxacin norfloxacine
nl novobiocin novobiocine
nl nystatin nystatine
nl ofloxacin ofloxacine
nl oleandomycin oleandomycine
nl ornidazole ornidazol
nl other meningococcal monovalent purified polysaccharides antigen meningokok, 1 type, gezuiverd polysaccaridenantigeen
nl other meningococcal polyvalent purified polysaccharides antigen meningokok, meer typen, gezuiverd polysaccharidenantigeen
nl oxacillin oxacilline
nl oxolinic acid oxolinezuur
nl oxytetracycline, combinations oxytetracycline, combinatiepreparaten
nl pazufloxacin pazufloxacine
nl pefloxacin pefloxacine
nl penamecillin penamecilline
nl penicillins, combinations with other antibacterials penicillines met andere antibacteriele middelen
nl pertussis immunoglobulin kinkhoestimmunoglobuline
nl pertussis, inactivated, whole cell pertussis, geinactiveerd, hele cel
nl pertussis, inactivated, whole cell, combinations with toxoids pertussis, geinactiveerd hele cel, met toxoiden
nl pertussis, purified antigen pertussis, gezuiverd antigeen
nl pertussis, purified antigen, combinations with toxoids pertussis, gezuiverd antigeen, met toxoiden
nl pheneticillin feneticilline
nl phenoxymethylpenicillin fenoxymethylpenicilline
nl pipemidic acid pipemidinezuur
nl piperacillin piperacilline
nl piperacillin and beta-lactamase inhibitor piperacilline met enzymremmer
nl piromidic acid piromidinezuur
nl pivampicillin pivampicilline
nl plague, inactivated, whole cell yersinia pestis, geinactiveerd, hele cel
nl pneumococcus, purified polysaccharides antigen pneumokok, gezuiverd polysaccharidenantigeen
nl pneumococcus, purified polysaccharides antigen conjugated pneumokok, gezuiverd geconjugeerd polysaccharidenantigeen
nl poliomyelitis oral, monovalent, live attenuated poliomyelitis, oraal, 1 type, levend verzwakt
nl poliomyelitis oral, trivalent, live attenuated poliomyelitis, oraal, 3 typen, levend verzwakt
nl poliomyelitis, trivalent, inactivated, whole virus poliomyelitis, 3 typen, geinactiveerd, intact virus
nl polymyxin B polymyxine B
nl posaconazole posaconazol
nl pristinamycin pristinamycine
nl procaine benzylpenicillin benzylpenicillineprocaine
nl propicillin propicilline
nl prulifloxacin prulifloxacine
nl quinupristin/dalfopristin quinupristine/dalfopristine
nl rabies immunoglobulin rabiesimmunoglobuline
nl rabies serum serum tegen rabies
nl rabies, inactivated, whole virus rabies, geinactiveerd, intact virus
nl ribostamycin ribostamycine
nl rifabutin rifabutine
nl rifampicin rifampicine
nl rifampicin and isoniazid rifampicine met isoniazide
nl rifampicin, pyrazinamide and isoniazid rifampicine met pyrazinamide en isoniazide
nl rifampicin, pyrazinamide, ethambutol and isoniazid rifampicine met pyrazinamide, ethambutol en isoniazide
nl rifamycin rifamycine
nl rifaximin rifaximine
nl rokitamycin rokitamycine
nl rosoxacin rosoxacine
nl rota virus, live attenuated rotavirus, levend verzwakt
nl roxithromycin roxitromycine
nl rubella immunoglobulin rubella-immunoglobuline
nl rubella, combinations with mumps, live attenuated rubella met bof, levend verzwakt
nl rubella, live attenuated rubella, levend verzwakt
nl rufloxacin rufloxacine
nl sisomicin sisomicine
nl snake venom antiserum serum tegen slangebeet
nl sodium aminosalicylate aminosalicylzuur,4- (na-zout)
nl sparfloxacin sparfloxacine
nl spectinomycin spectinomycine
nl spiramycin spiramycine
nl spiramycin and metronidazole spiramycine met andere antibacteriele middelen
nl staphylococcus immunoglobulin stafylokokkenimmunoglobuline
nl streptoduocin streptoduocine
nl streptomycin streptomycine
nl streptomycin and isoniazid streptomycine met isoniazide
nl sulbenicillin sulbenicilline
nl sulfadiazine and tetroxoprim sulfadiazine met tetroxoprim
nl sulfadiazine and trimethoprim sulfadiazine met trimethoprim
nl sulfadimidine and trimethoprim sulfadimidine met trimethoprim
nl sulfafurazole sulfafurazol
nl sulfaisodimidine sulfisomidine
nl sulfalene sulfaleen
nl sulfamazone sulfamazon
nl sulfamerazine and trimethoprim sulfamerazine met trimethoprim
nl sulfamethizole sulfamethizol
nl sulfamethoxazole sulfamethoxazol
nl sulfamethoxazole and trimethoprim sulfamethoxazol met trimethoprim
nl sulfametoxydiazine sulfamethoxydiazine
nl sulfametrole and trimethoprim sulfametrol met trimethoprim
nl sulfamoxole sulfamoxol
nl sulfamoxole and trimethoprim sulfamoxol met trimethoprim
nl sulfaperin sulfaperine
nl sulfaphenazole sulfafenazol
nl sulfathiazole sulfathiazol
nl sulfathiourea sulfathioureum
nl sulfonamides, combinations with other antibacterials (excl, trimethoprim) sulfonamiden met andere antibacteriele middelen (exc trim)
nl sultamicillin sultamicilline
nl talampicillin talampicilline
nl teicoplanin teicoplanine
nl telithromycin telitromycine
nl temafloxacin temafloxacine
nl temocillin temocilline
nl tenofovir disoproxil tenofovir
nl terizidone terizidon
nl tetanus antitoxin serum tegen tetanus
nl tetanus immunoglobulin tetanusimmunoglobuline
nl tetanus toxoid tetanustoxoide
nl tetanus toxoid, combinations with diphtheria toxoid tetanustoxoide met difterietoxoide
nl tetanus toxoid, combinations with tetanus immunoglobulin tetanustoxoide met tetanusimmunoglobuline
nl thiamphenicol thiamfenicol
nl thiamphenicol, combinations thiamfenicol combinatiepreparaten
nl thioacetazone and isoniazid thioacetazon met isoniazide
nl ticarcillin ticarcilline
nl ticarcillin and beta-lactamase inhibitor ticarcilline met enzymremmer
nl tinidazole tinidazol
nl tobramycin tobramycine
nl troleandomycin troleandomycine
nl trovafloxacin trovafloxacine
nl tuberculosis, live attenuated bacillus calmette guerin, levend verzwakt
nl typhoid, combinations with paratyphi types buiktyfus met paratyfus-typen
nl typhoid, inactivated, whole cell buiktyfus, geinactiveerd, hele cel
nl typhoid, oral, live attenuated buiktyfus, oraal, levend verzwakt
nl typhoid, purified polysaccharide antigen buiktyfus, gezuiverd polysaccharidenantigeen
nl typhoid-hepatitis A buiktyfus-hepatitis A
nl typhus exanthematicus, inactivated, whole cell vlektyfus, geinactiveerd, hele cel
nl vaccinia immunoglobulin vaccinia-immunoglobuline
nl vancomycin vancomycine
nl varicella, live attenuated varicella, levend verzwakt
nl varicella/zoster immunoglobulin varicella-zoster-immunoglobuline
nl voriconazole voriconazol
nl yellow fever, live attenuated gele koorts, levend verzwakt
nl Clindamycin Clindamycine
nl Clometocillin Clometocilline
nl Clotrimazole Clotrimazol
nl Cloxacillin Cloxacilline
nl Colistin Colistine
nl Dapsone Dapson
nl Daptomycin Daptomycine
nl Dibekacin Dibekacine
nl Dicloxacillin Dicloxacilline
nl Dirithromycin Diritromycine
nl Econazole Econazol
nl Enoxacin Enoxacine
nl Epicillin Epicilline
nl Erythromycin Erytromycine
nl Ethambutol/isoniazid Ethambutol/isoniazide
nl Fleroxacin Fleroxacine
nl Flucloxacillin Flucloxacilline
nl Fluconazole Fluconazol
nl Flucytosine Fluorocytosine
nl Flurithromycin Fluritromycine
nl Fosfomycin Fosfomycine
nl Fusidic acid Fusidinezuur
nl Gatifloxacin Gatifloxacine
nl Gemifloxacin Gemifloxacine
nl Gentamicin Gentamicine
nl Grepafloxacin Grepafloxacine
nl Hachimycin Hachimycine
nl Hetacillin Hetacilline
nl Imipenem/cilastatin Imipenem/enzymremmer
nl Inosine pranobex Inosiplex
nl Isepamicin Isepamicine
nl Isoconazole Isoconazol
nl Isoniazid Isoniazide
nl Itraconazole Itraconazol
nl Josamycin Josamycine
nl Kanamycin Kanamycine
nl Ketoconazole Ketoconazol
nl Levofloxacin Levofloxacine
nl Lincomycin Lincomycine
nl Lomefloxacin Lomefloxacine
nl Lysozyme Lysozym
nl Mandelic acid Amandelzuur
nl Metampicillin Metampicilline
nl Meticillin Meticilline
nl Metisazone Metisazon
nl Metronidazole Metronidazol
nl Mezlocillin Mezlocilline
nl Micafungin Micafungine
nl Miconazole Miconazol
nl Midecamycin Midecamycine
nl Miocamycin Miocamycine
nl Moxifloxacin Moxifloxacine
nl Mupirocin Mupirocine
nl Nalidixic acid Nalidixinezuur
nl Neomycin Neomycine
nl Netilmicin Netilmicine
nl Nitrofurantoin Nitrofurantoine
nl Norfloxacin Norfloxacine
nl Novobiocin Novobiocine
nl Nystatin Nystatine
nl Ofloxacin Ofloxacine
nl Oleandomycin Oleandomycine
nl Ornidazole Ornidazol
nl Oxacillin Oxacilline
nl Oxolinic acid Oxolinezuur
nl Oxytetracycline Oxytetracycline
nl Pazufloxacin Pazufloxacine
nl Pefloxacin Pefloxacine
nl Penamecillin Penamecilline
nl Penicillin Penicilline
nl Pheneticillin Feneticilline
nl Phenoxymethylpenicillin Fenoxymethylpenicilline
nl Pipemidic acid Pipemidinezuur
nl Piperacillin Piperacilline
nl Piperacillin/beta-lactamase inhibitor Piperacilline/enzymremmer
nl Piromidic acid Piromidinezuur
nl Pivampicillin Pivampicilline
nl Polymyxin B Polymyxine B
nl Posaconazole Posaconazol
nl Pristinamycin Pristinamycine
nl Procaine benzylpenicillin Benzylpenicillineprocaine
nl Propicillin Propicilline
nl Prulifloxacin Prulifloxacine
nl Quinupristin/dalfopristin Quinupristine/dalfopristine
nl Ribostamycin Ribostamycine
nl Rifabutin Rifabutine
nl Rifampicin Rifampicine
nl Rifampicin, pyrazinamide, ethambutol/isoniazid Rifampicine/pyrazinamide, ethambutol en isoniazide
nl Rifampicin, pyrazinamide/isoniazid Rifampicine/pyrazinamide en isoniazide
nl Rifampicin/isoniazid Rifampicine/isoniazide
nl Rifamycin Rifamycine
nl Rifaximin Rifaximine
nl Rokitamycin Rokitamycine
nl Rosoxacin Rosoxacine
nl Roxithromycin Roxitromycine
nl Rufloxacin Rufloxacine
nl Sisomicin Sisomicine
nl Sodium aminosalicylate Aminosalicylzuur,4- (na-zout)
nl Sparfloxacin Sparfloxacine
nl Spectinomycin Spectinomycine
nl Spiramycin Spiramycine
nl Spiramycin/metronidazole Spiramycine/andere antibacteriele middelen
nl Staphylococcus immunoglobulin Stafylokokkenimmunoglobuline
nl Streptoduocin Streptoduocine
nl Streptomycin Streptomycine
nl Streptomycin/isoniazid Streptomycine/isoniazide
nl Sulbenicillin Sulbenicilline
nl Sulfadiazine/tetroxoprim Sulfadiazine/tetroxoprim
nl Sulfadiazine/trimethoprim Sulfadiazine/trimethoprim
nl Sulfadimidine/trimethoprim Sulfadimidine/trimethoprim
nl Sulfafurazole Sulfafurazol
nl Sulfaisodimidine Sulfisomidine
nl Sulfalene Sulfaleen
nl Sulfamazone Sulfamazon
nl Sulfamerazine/trimethoprim Sulfamerazine/trimethoprim
nl Sulfamethizole Sulfamethizol
nl Sulfamethoxazole Sulfamethoxazol
nl Sulfamethoxazole/trimethoprim Sulfamethoxazol/trimethoprim
nl Sulfametoxydiazine Sulfamethoxydiazine
nl Sulfametrole/trimethoprim Sulfametrol/trimethoprim
nl Sulfamoxole Sulfamoxol
nl Sulfamoxole/trimethoprim Sulfamoxol/trimethoprim
nl Sulfaperin Sulfaperine
nl Sulfaphenazole Sulfafenazol
nl Sulfathiazole Sulfathiazol
nl Sulfathiourea Sulfathioureum
nl Sultamicillin Sultamicilline
nl Talampicillin Talampicilline
nl Teicoplanin Teicoplanine
nl Telithromycin Telitromycine
nl Temafloxacin Temafloxacine
nl Temocillin Temocilline
nl Tenofovir disoproxil Tenofovir
nl Terizidone Terizidon
nl Thiamphenicol Thiamfenicol
nl Thiamphenicol Thiamfenicol combinatiepreparaten
nl Thioacetazone/isoniazid Thioacetazon/isoniazide
nl Ticarcillin Ticarcilline
nl Ticarcillin/beta-lactamase inhibitor Ticarcilline/enzymremmer
nl Tinidazole Tinidazol
nl Tobramycin Tobramycine
nl Troleandomycin Troleandomycine
nl Trovafloxacin Trovafloxacine
nl Vancomycin Vancomycine
nl Voriconazole Voriconazol

Can't render this file because it has a wrong number of fields in line 157.

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@ -22,8 +22,8 @@ On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://
}
\examples{
as.atc("meropenem")
atc_name("J01DH02")
as.ab("meropenem")
ab_name("J01DH02")
atc_tradenames("flucloxacillin")
ab_tradenames("flucloxacillin")
}

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@ -15,7 +15,7 @@ Strings will be translated to foreign languages if they are defined in a local t
\code{system.file("translations.tsv", package = "AMR")}
This file will be read by all functions where a translated output can be desired, like all \code{\link{mo_property}} functions (\code{\link{mo_fullname}}, \code{\link{mo_type}}, etc.). Please suggest your own translations \href{https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation suggestion}{by creating a new issue on our repository}.
This file will be read by all functions where a translated output can be desired, like all \code{\link{mo_property}} functions (\code{\link{mo_fullname}}, \code{\link{mo_type}}, etc.). Please suggest your own translations \href{https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation\%20suggestion}{by creating a new issue on our repository}.
The system language will be used at default, if supported, using \code{\link{get_locale}}. The system language can be overwritten with \code{\link{getOption}("AMR_locale")}.
}

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@ -285,7 +285,7 @@ antibiotics[which(antibiotics$ab == "LTM"), "abbreviations"][[1]] <- list(c("MOX
antibiotics <- filter(antibiotics, ab != "MOX")
# ESBL E-test codes:
antibiotics[which(antibiotics$ab == "CCV"), "abbreviations"][[1]] <- list(c("xtzl"))
antibiotics[which(antibiotics$ab == "CAZ"), "abbreviations"][[1]] <- list(c(antibiotics[which(antibiotics$ab == "CAZ"), "abbreviations"][[1]], "xtz"))
antibiotics[which(antibiotics$ab == "CAZ"), "abbreviations"][[1]] <- list(c(antibiotics[which(antibiotics$ab == "CAZ"), "abbreviations"][[1]], "xtz", "cefta"))
antibiotics[which(antibiotics$ab == "CPC"), "abbreviations"][[1]] <- list(c("xpml"))
antibiotics[which(antibiotics$ab == "FEP"), "abbreviations"][[1]] <- list(c(antibiotics[which(antibiotics$ab == "FEP"), "abbreviations"][[1]], "xpm"))
antibiotics[which(antibiotics$ab == "CTC"), "abbreviations"][[1]] <- list(c("xctl"))
@ -295,3 +295,4 @@ class(antibiotics$ab) <- "ab"
class(antibiotics$atc) <- "atc"
usethis::use_data(antibiotics, overwrite = TRUE)
rm(antibiotics)