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mdro fix
This commit is contained in:
parent
68cc7ef0d0
commit
fcc77164e9
@ -1,6 +1,6 @@
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Package: AMR
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Version: 0.6.1.9003
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Date: 2019-05-10
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Date: 2019-05-11
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Title: Antimicrobial Resistance Analysis
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Authors@R: c(
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person(
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@ -26,7 +26,7 @@
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#'
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#' \code{system.file("translations.tsv", package = "AMR")}
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#'
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#' This file will be read by all functions where a translated output can be desired, like all \code{\link{mo_property}} functions (\code{\link{mo_fullname}}, \code{\link{mo_type}}, etc.). Please suggest your own translations \href{https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation suggestion}{by creating a new issue on our repository}.
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#' This file will be read by all functions where a translated output can be desired, like all \code{\link{mo_property}} functions (\code{\link{mo_fullname}}, \code{\link{mo_type}}, etc.). Please suggest your own translations \href{https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation\%20suggestion}{by creating a new issue on our repository}.
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#'
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#' The system language will be used at default, if supported, using \code{\link{get_locale}}. The system language can be overwritten with \code{\link{getOption}("AMR_locale")}.
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#' @inheritSection AMR Read more on our website!
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15
R/mdro.R
15
R/mdro.R
@ -321,15 +321,12 @@ mdro <- function(x,
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& !ab_missing(CIP)
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& !ab_missing(CAZ)
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& !ab_missing(TZP) ) {
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tbl_ <- tbl_ %>% mutate(
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psae = 0,
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psae = ifelse(MEM == "R" | IPM == "R", psae + 1, psae),
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psae = ifelse(GEN == "R" & TOB == "R", psae + 1, psae),
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psae = ifelse(CIP == "R", psae + 1, psae),
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psae = ifelse(CAZ == "R", psae + 1, psae),
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psae = ifelse(TZP == "R", psae + 1, psae),
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psae = ifelse(is.na(psae), 0, psae)
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)
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tbl_$psae <- 0
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tbl_[which(tbl_[, MEM] == "R" | tbl_[, IPM] == "R"), "psae"] <- 1 + tbl_[which(tbl_[, MEM] == "R" | tbl_[, IPM] == "R"), "psae"]
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tbl_[which(tbl_[, GEN] == "R" & tbl_[, TOB] == "R"), "psae"] <- 1 + tbl_[which(tbl_[, GEN] == "R" & tbl_[, TOB] == "R"), "psae"]
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tbl_[which(tbl_[, CIP] == "R"), "psae"] <- 1 + tbl_[which(tbl_[, CIP] == "R"), "psae"]
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tbl_[which(tbl_[, CAZ] == "R"), "psae"] <- 1 + tbl_[which(tbl_[, CAZ] == "R"), "psae"]
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tbl_[which(tbl_[, TZP] == "R"), "psae"] <- 1 + tbl_[which(tbl_[, TZP] == "R"), "psae"]
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} else {
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tbl_$psae <- 0
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}
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@ -33,8 +33,8 @@
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#' @name WHOCC
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#' @rdname WHOCC
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#' @examples
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#' as.atc("meropenem")
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#' atc_name("J01DH02")
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#' as.ab("meropenem")
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#' ab_name("J01DH02")
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#'
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#' atc_tradenames("flucloxacillin")
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#' ab_tradenames("flucloxacillin")
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NULL
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Binary file not shown.
@ -80,7 +80,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="../index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9003</span>
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</span>
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</div>
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@ -145,7 +145,7 @@
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</a>
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</li>
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<li>
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<a href="../reference/atc_property.html">
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<a href="../reference/ab_property.html">
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<span class="fa fa-capsules"></span>
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Get properties of an antibiotic
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@ -258,10 +258,10 @@ This package contains <strong>all ~500 antimicrobial drugs</strong> and their An
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<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
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<pre class="examples"><span class='co'># NOT RUN {</span>
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<span class='fu'><a href='as.atc.html'>as.atc</a></span>(<span class='st'>"meropenem"</span>)
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<span class='fu'><a href='atc_property.html'>atc_name</a></span>(<span class='st'>"J01DH02"</span>)
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<span class='fu'><a href='as.ab.html'>as.ab</a></span>(<span class='st'>"meropenem"</span>)
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<span class='fu'><a href='ab_property.html'>ab_name</a></span>(<span class='st'>"J01DH02"</span>)
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<span class='fu'><a href='atc_property.html'>atc_tradenames</a></span>(<span class='st'>"flucloxacillin"</span>)
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<span class='fu'><a href='ab_property.html'>ab_tradenames</a></span>(<span class='st'>"flucloxacillin"</span>)
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<span class='co'># }</span></pre>
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</div>
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<div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
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@ -247,7 +247,7 @@
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<p>Strings will be translated to foreign languages if they are defined in a local translation file. This file comes with this package and can be found when running:</p>
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<p><code><a href='https://www.rdocumentation.org/packages/base/topics/system.file'>system.file("translations.tsv", package = "AMR")</a></code></p>
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<p>This file will be read by all functions where a translated output can be desired, like all <code><a href='mo_property.html'>mo_property</a></code> functions (<code><a href='mo_property.html'>mo_fullname</a></code>, <code><a href='mo_property.html'>mo_type</a></code>, etc.). Please suggest your own translations <a href='https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation suggestion'>by creating a new issue on our repository</a>.</p>
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<p>This file will be read by all functions where a translated output can be desired, like all <code><a href='mo_property.html'>mo_property</a></code> functions (<code><a href='mo_property.html'>mo_fullname</a></code>, <code><a href='mo_property.html'>mo_type</a></code>, etc.). Please suggest your own translations <a href='https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation%20suggestion'>by creating a new issue on our repository</a>.</p>
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<p>The system language will be used at default, if supported, using <code>get_locale</code>. The system language can be overwritten with <code><a href='https://www.rdocumentation.org/packages/base/topics/options'>getOption</a>("AMR_locale")</code>.</p>
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<h2 class="hasAnchor" id="read-more-on-our-website-"><a class="anchor" href="#read-more-on-our-website-"></a>Read more on our website!</h2>
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@ -154,303 +154,204 @@ pt vegetative vegetativo FALSE FALSE
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pt ([([ ]*?)group \\1grupo FALSE FALSE
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pt ([([ ]*?)Group \\1Grupo FALSE FALSE
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nl 4-aminosalicylic acid aminosalicylzuur
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nl adefovir dipivoxil adefovir
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nl aldesulfone sodium aldesulfon
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nl amikacin amikacine
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nl amoxicillin amoxicilline
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nl amoxicillin and beta-lactamase inhibitor amoxicilline met enzymremmer
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nl amphotericin B amfotericine B
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nl ampicillin ampicilline
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nl ampicillin and beta-lactamase inhibitor ampicilline met enzymremmer
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nl ampicillin, combinations ampicilline, combinatiepreparaten
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nl anidulafungin anidulafungine
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nl anthrax antigen anthrax-antigeen
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nl anti-d (rh) immunoglobulin rhesus(d)immunoglobuline
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nl azidocillin azidocilline
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nl azithromycin azitromycine
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nl azlocillin azlocilline
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nl bacampicillin bacampicilline
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nl bacitracin bacitracine
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nl benzathine benzylpenicillin benzylpenicillinebenzathine
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nl benzathine phenoxymethylpenicillin fenoxymethylpenicillinebenzathine
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nl benzylpenicillin benzylpenicilline
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nl botulinum antitoxin serum tegen botulisme
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nl brucella antigen brucella-antigeen
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nl calcium aminosalicylate aminosalicylzuur
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nl capreomycin capreomycine
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nl carbenicillin carbenicilline
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nl carindacillin carindacilline
|
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nl caspofungin caspofungine
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nl cefacetrile cefacetril
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nl cefalexin cefalexine
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nl cefalotin cefalotine
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nl cefamandole cefamandol
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nl cefapirin cefapirine
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nl cefazedone cefazedon
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nl cefazolin cefazoline
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nl cefepime cefepim
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nl cefixime cefixim
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nl cefmenoxime cefmenoxim
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nl cefmetazole cefmetazol
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nl cefodizime cefodizim
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nl cefonicid cefonicide
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nl cefoperazone cefoperazon
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nl cefoperazone and beta-lactamase inhibitor cefoperazon combinatiepreparaten
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nl cefotaxime cefotaxim
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nl cefoxitin cefoxitine
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nl cefpirome cefpirom
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nl cefpodoxime cefpodoxim
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nl cefsulodin cefsulodine
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nl ceftazidime ceftazidim
|
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nl ceftezole ceftezol
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nl ceftizoxime ceftizoxim
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nl ceftriaxone ceftriaxon
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nl ceftriaxone, combinations ceftriaxon, combinatiepreparaten
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nl cefuroxime cefuroxim
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nl cefuroxime and metronidazole cefuroxim met andere antibacteriele middelen
|
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nl chloramphenicol chlooramfenicol
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nl chlortetracycline chloortetracycline
|
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nl cholera, combinations with typhoid vaccine, inactivated, whole cell choleravaccin met tyfusvaccin, geinactiveerd, hele cel
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nl cholera, inactivated, whole cell cholera, geinactiveerd, hele cel
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nl cholera, live attenuated cholera, levend verzwakt
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nl cinoxacin cinoxacine
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nl ciprofloxacin ciprofloxacine
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nl clarithromycin claritromycine
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nl 4-aminosalicylic acid 4-aminosalicylzuur
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nl Adefovir dipivoxil Adefovir
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nl Aldesulfone sodium Aldesulfon
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nl Amikacin Amikacine
|
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nl Amoxicillin Amoxicilline
|
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nl Amoxicillin/beta-lactamase inhibitor Amoxicilline/enzymremmer
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nl Amphotericin B Amfotericine B
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nl Ampicillin Ampicilline
|
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nl Ampicillin/beta-lactamase inhibitor Ampicilline/enzymremmer
|
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nl Anidulafungin Anidulafungine
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nl Azidocillin Azidocilline
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nl Azithromycin Azitromycine
|
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nl Azlocillin Azlocilline
|
||||
nl Bacampicillin Bacampicilline
|
||||
nl Bacitracin Bacitracine
|
||||
nl Benzathine benzylpenicillin Benzylpenicillinebenzathine
|
||||
nl Benzathine phenoxymethylpenicillin Fenoxymethylpenicillinebenzathine
|
||||
nl Benzylpenicillin Benzylpenicilline
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||||
nl Calcium aminosalicylate Aminosalicylzuur
|
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nl Capreomycin Capreomycine
|
||||
nl Carbenicillin Carbenicilline
|
||||
nl Carindacillin Carindacilline
|
||||
nl Caspofungin Caspofungine
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||||
nl Cefacetrile Cefacetril
|
||||
nl Cefalexin Cefalexine
|
||||
nl Cefalotin Cefalotine
|
||||
nl Cefamandole Cefamandol
|
||||
nl Cefapirin Cefapirine
|
||||
nl Cefazedone Cefazedon
|
||||
nl Cefazolin Cefazoline
|
||||
nl Cefepime Cefepim
|
||||
nl Cefixime Cefixim
|
||||
nl Cefmenoxime Cefmenoxim
|
||||
nl Cefmetazole Cefmetazol
|
||||
nl Cefodizime Cefodizim
|
||||
nl Cefonicid Cefonicide
|
||||
nl Cefoperazone Cefoperazon
|
||||
nl Cefoperazone/beta-lactamase inhibitor Cefoperazon combinatiepreparaten
|
||||
nl Cefotaxime Cefotaxim
|
||||
nl Cefoxitin Cefoxitine
|
||||
nl Cefpirome Cefpirom
|
||||
nl Cefpodoxime Cefpodoxim
|
||||
nl Cefsulodin Cefsulodine
|
||||
nl Ceftazidime Ceftazidim
|
||||
nl Ceftezole Ceftezol
|
||||
nl Ceftizoxime Ceftizoxim
|
||||
nl Ceftriaxone Ceftriaxon
|
||||
nl Cefuroxime Cefuroxim
|
||||
nl Cefuroxime/metronidazole Cefuroxim/andere antibacteriele middelen
|
||||
nl Chloramphenicol Chlooramfenicol
|
||||
nl Chlortetracycline Chloortetracycline
|
||||
nl Cinoxacin Cinoxacine
|
||||
nl Ciprofloxacin Ciprofloxacine
|
||||
nl Clarithromycin Claritromycine
|
||||
nl Clavulanic acid Clavulaanzuur
|
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nl clavulanic acid clavulaanzuur
|
||||
nl clindamycin clindamycine
|
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nl clometocillin clometocilline
|
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nl clotrimazole clotrimazol
|
||||
nl cloxacillin cloxacilline
|
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nl colistin colistine
|
||||
nl combinations combinatiepreparaten
|
||||
nl combinations combinatiepreparaten
|
||||
nl combinations combinatiepreparaten
|
||||
nl combinations combinatiepreparaten
|
||||
nl combinations combinatiepreparaten
|
||||
nl combinations combinatiepreparaten
|
||||
nl combinations combinatiepreparaten
|
||||
nl combinations of penicillins combinatiepreparaten
|
||||
nl combinations of tetracyclines tetracycline combinatiepreparaten
|
||||
nl cytomegalovirus immunoglobulin cytomegalie-immunoglobuline
|
||||
nl dapsone dapson
|
||||
nl daptomycin daptomycine
|
||||
nl dibekacin dibekacine
|
||||
nl dicloxacillin dicloxacilline
|
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nl diphtheria antitoxin serum tegen difterie
|
||||
nl diphtheria immunoglobulin difterie-immunoglobuline
|
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nl diphtheria toxoid difterietoxoide
|
||||
nl diphtheria-hemophilus influenzae b-pertussis-poliomyelitis-tetanus difterie-haemophilus-kinkhoest-poliomyelitis-tetanus
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nl diphtheria-hemophilus influenzae b-pertussis-poliomyelitis-tetanus-hepatitis B difterie-haemophilus-kinkhoest-polio-tetanus-hepatitis B
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nl diphtheria-hemophilus influenzae b-pertussis-tetanus-hepatitis B difterie-haemophilus-kinkhoest-tetanus-hepatitis B
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nl diphtheria-hepatitis b-pertussis-tetanus difterie-hepatitis b-kinkhoest-tetanus
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nl diphtheria-hepatitis b-tetanus difterie-hepatitis b-tetanus
|
||||
nl diphtheria-pertussis-poliomyelitis-tetanus difterie-kinkhoest-poliomyelitis-tetanus
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nl diphtheria-pertussis-poliomyelitis-tetanus-hepatitis B difterie-kinkhoest-poliomyelitis-tetanus-hepatitis B
|
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nl diphtheria-poliomyelitis-tetanus difterie-poliomyelitis-tetanus
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||||
nl diphtheria-rubella-tetanus difterie-rubella-tetanus
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nl dirithromycin diritromycine
|
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nl econazole econazol
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nl encephalitis, japanese, inactivated, whole virus japanse-encefalitis, geinactiveerd, intact virus
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nl encephalitis, tick borne immunoglobulin teken-encephalitis-immunoglobuline
|
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nl encephalitis, tick borne, inactivated, whole virus tekenencefalitis, geinactiveerd, intact virus
|
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nl enoxacin enoxacine
|
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nl epicillin epicilline
|
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nl erythromycin erytromycine
|
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nl ethambutol and isoniazid ethambutol met isoniazide
|
||||
nl fleroxacin fleroxacine
|
||||
nl flucloxacillin flucloxacilline
|
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nl fluconazole fluconazol
|
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nl flucytosine fluorocytosine
|
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nl flurithromycin fluritromycine
|
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nl fosfomycin fosfomycine
|
||||
nl fusidic acid fusidinezuur
|
||||
nl gas-gangrene sera serum tegen gasgangreen
|
||||
nl gatifloxacin gatifloxacine
|
||||
nl gemifloxacin gemifloxacine
|
||||
nl gentamicin gentamicine
|
||||
nl grepafloxacin grepafloxacine
|
||||
nl hachimycin hachimycine
|
||||
nl hemophilus influenzae B and hepatitis B haemophilus influenzae b-hepatitis B
|
||||
nl hemophilus influenzae B and poliomyelitis haemophilus influenzae b-poliomyelitis
|
||||
nl hemophilus influenzae B, combinations with pertussis and toxoids haemophilus influenzae B met kinkhoest en toxoiden
|
||||
nl hemophilus influenzae B, combinations with toxoids haemophilus influenzae B met toxoiden
|
||||
nl hemophilus influenzae B, purified antigen conjugated haemophilus influenzae B, gezuiverd geconjugeerd antigeen
|
||||
nl hepatitis A immunoglobulin hepatitis a-immunoglobuline
|
||||
nl hepatitis A, inactivated, whole virus hepatitis A, geinactiveerd, intact virus
|
||||
nl hepatitis B immunoglobulin hepatitis b-immunoglobuline
|
||||
nl hepatitis B, purified antigen hepatitis B, gezuiverd antigeen
|
||||
nl hetacillin hetacilline
|
||||
nl imipenem and cilastatin imipenem met enzymremmer
|
||||
nl immunoglobulins, normal human, for extravascular adm, immunoglobuline, normaal, extravasculair
|
||||
nl immunoglobulins, normal human, for intravascular adm, immunoglobuline, normaal, intravasculair
|
||||
nl influenza, inactivated, split virus or surface antigen influenza, gezuiverd antigeen
|
||||
nl influenza, inactivated, whole virus influenza, geinactiveerd, intact virus
|
||||
nl inosine pranobex inosiplex
|
||||
nl isepamicin isepamicine
|
||||
nl isoconazole isoconazol
|
||||
nl isoniazid isoniazide
|
||||
nl isoniazid, combinations isoniazide, combinatiepreparaten
|
||||
nl itraconazole itraconazol
|
||||
nl josamycin josamycine
|
||||
nl kanamycin kanamycine
|
||||
nl ketoconazole ketoconazol
|
||||
nl levofloxacin levofloxacine
|
||||
nl lincomycin lincomycine
|
||||
nl lomefloxacin lomefloxacine
|
||||
nl lysozyme lysozym
|
||||
nl mandelic acid amandelzuur
|
||||
nl measles immunoglobulin mazelenimmunoglobuline
|
||||
nl measles, combinations with mumps and rubella, live attenuated mazelen met bof en rubella, levend verzwakt
|
||||
nl measles, combinations with mumps, live attenuated mazelen met bof, levend verzwakt
|
||||
nl measles, combinations with mumps, rubella and varicella, live attenuated mazelen met bof, rubella en varicella, levend verzwakt
|
||||
nl measles, combinations with rubella, live attenuated mazelen met rubella, levend verzwakt
|
||||
nl measles, live attenuated mazelen, levend verzwakt
|
||||
nl meningococcus A, purified polysaccharides antigen meningokok A, gezuiverd polysaccharidenantigeen
|
||||
nl meningococcus A,c, bivalent purified polysaccharides antigen meningokok, 2 typen, gezuiverd polysaccharidenantigeen
|
||||
nl meningococcus A,c,y,w-135, tetravalent purified polysaccharides antigen meningokok, 4 typen, gezuiverd polysaccharidenantigeen
|
||||
nl meningococcus B, outer membrane vesicle vaccine meningokok B, buitenmembraanvaccin
|
||||
nl meningococcus C, purified polysaccharides antigen conjugated meningokok C, gezuiverd saccharidenantigeen geconjugeerd
|
||||
nl metampicillin metampicilline
|
||||
nl meticillin meticilline
|
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nl metisazone metisazon
|
||||
nl metronidazole metronidazol
|
||||
nl mezlocillin mezlocilline
|
||||
nl micafungin micafungine
|
||||
nl miconazole miconazol
|
||||
nl midecamycin midecamycine
|
||||
nl miocamycin miocamycine
|
||||
nl moxifloxacin moxifloxacine
|
||||
nl mumps immunoglobulin bofimmunoglobuline
|
||||
nl mumps, live attenuated bof, levend verzwakt
|
||||
nl mupirocin mupirocine
|
||||
nl nalidixic acid nalidixinezuur
|
||||
nl neomycin neomycine
|
||||
nl netilmicin netilmicine
|
||||
nl nitrofurantoin nitrofurantoine
|
||||
nl norfloxacin norfloxacine
|
||||
nl novobiocin novobiocine
|
||||
nl nystatin nystatine
|
||||
nl ofloxacin ofloxacine
|
||||
nl oleandomycin oleandomycine
|
||||
nl ornidazole ornidazol
|
||||
nl other meningococcal monovalent purified polysaccharides antigen meningokok, 1 type, gezuiverd polysaccaridenantigeen
|
||||
nl other meningococcal polyvalent purified polysaccharides antigen meningokok, meer typen, gezuiverd polysaccharidenantigeen
|
||||
nl oxacillin oxacilline
|
||||
nl oxolinic acid oxolinezuur
|
||||
nl oxytetracycline, combinations oxytetracycline, combinatiepreparaten
|
||||
nl pazufloxacin pazufloxacine
|
||||
nl pefloxacin pefloxacine
|
||||
nl penamecillin penamecilline
|
||||
nl penicillins, combinations with other antibacterials penicillines met andere antibacteriele middelen
|
||||
nl pertussis immunoglobulin kinkhoestimmunoglobuline
|
||||
nl pertussis, inactivated, whole cell pertussis, geinactiveerd, hele cel
|
||||
nl pertussis, inactivated, whole cell, combinations with toxoids pertussis, geinactiveerd hele cel, met toxoiden
|
||||
nl pertussis, purified antigen pertussis, gezuiverd antigeen
|
||||
nl pertussis, purified antigen, combinations with toxoids pertussis, gezuiverd antigeen, met toxoiden
|
||||
nl pheneticillin feneticilline
|
||||
nl phenoxymethylpenicillin fenoxymethylpenicilline
|
||||
nl pipemidic acid pipemidinezuur
|
||||
nl piperacillin piperacilline
|
||||
nl piperacillin and beta-lactamase inhibitor piperacilline met enzymremmer
|
||||
nl piromidic acid piromidinezuur
|
||||
nl pivampicillin pivampicilline
|
||||
nl plague, inactivated, whole cell yersinia pestis, geinactiveerd, hele cel
|
||||
nl pneumococcus, purified polysaccharides antigen pneumokok, gezuiverd polysaccharidenantigeen
|
||||
nl pneumococcus, purified polysaccharides antigen conjugated pneumokok, gezuiverd geconjugeerd polysaccharidenantigeen
|
||||
nl poliomyelitis oral, monovalent, live attenuated poliomyelitis, oraal, 1 type, levend verzwakt
|
||||
nl poliomyelitis oral, trivalent, live attenuated poliomyelitis, oraal, 3 typen, levend verzwakt
|
||||
nl poliomyelitis, trivalent, inactivated, whole virus poliomyelitis, 3 typen, geinactiveerd, intact virus
|
||||
nl polymyxin B polymyxine B
|
||||
nl posaconazole posaconazol
|
||||
nl pristinamycin pristinamycine
|
||||
nl procaine benzylpenicillin benzylpenicillineprocaine
|
||||
nl propicillin propicilline
|
||||
nl prulifloxacin prulifloxacine
|
||||
nl quinupristin/dalfopristin quinupristine/dalfopristine
|
||||
nl rabies immunoglobulin rabiesimmunoglobuline
|
||||
nl rabies serum serum tegen rabies
|
||||
nl rabies, inactivated, whole virus rabies, geinactiveerd, intact virus
|
||||
nl ribostamycin ribostamycine
|
||||
nl rifabutin rifabutine
|
||||
nl rifampicin rifampicine
|
||||
nl rifampicin and isoniazid rifampicine met isoniazide
|
||||
nl rifampicin, pyrazinamide and isoniazid rifampicine met pyrazinamide en isoniazide
|
||||
nl rifampicin, pyrazinamide, ethambutol and isoniazid rifampicine met pyrazinamide, ethambutol en isoniazide
|
||||
nl rifamycin rifamycine
|
||||
nl rifaximin rifaximine
|
||||
nl rokitamycin rokitamycine
|
||||
nl rosoxacin rosoxacine
|
||||
nl rota virus, live attenuated rotavirus, levend verzwakt
|
||||
nl roxithromycin roxitromycine
|
||||
nl rubella immunoglobulin rubella-immunoglobuline
|
||||
nl rubella, combinations with mumps, live attenuated rubella met bof, levend verzwakt
|
||||
nl rubella, live attenuated rubella, levend verzwakt
|
||||
nl rufloxacin rufloxacine
|
||||
nl sisomicin sisomicine
|
||||
nl snake venom antiserum serum tegen slangebeet
|
||||
nl sodium aminosalicylate aminosalicylzuur,4- (na-zout)
|
||||
nl sparfloxacin sparfloxacine
|
||||
nl spectinomycin spectinomycine
|
||||
nl spiramycin spiramycine
|
||||
nl spiramycin and metronidazole spiramycine met andere antibacteriele middelen
|
||||
nl staphylococcus immunoglobulin stafylokokkenimmunoglobuline
|
||||
nl streptoduocin streptoduocine
|
||||
nl streptomycin streptomycine
|
||||
nl streptomycin and isoniazid streptomycine met isoniazide
|
||||
nl sulbenicillin sulbenicilline
|
||||
nl sulfadiazine and tetroxoprim sulfadiazine met tetroxoprim
|
||||
nl sulfadiazine and trimethoprim sulfadiazine met trimethoprim
|
||||
nl sulfadimidine and trimethoprim sulfadimidine met trimethoprim
|
||||
nl sulfafurazole sulfafurazol
|
||||
nl sulfaisodimidine sulfisomidine
|
||||
nl sulfalene sulfaleen
|
||||
nl sulfamazone sulfamazon
|
||||
nl sulfamerazine and trimethoprim sulfamerazine met trimethoprim
|
||||
nl sulfamethizole sulfamethizol
|
||||
nl sulfamethoxazole sulfamethoxazol
|
||||
nl sulfamethoxazole and trimethoprim sulfamethoxazol met trimethoprim
|
||||
nl sulfametoxydiazine sulfamethoxydiazine
|
||||
nl sulfametrole and trimethoprim sulfametrol met trimethoprim
|
||||
nl sulfamoxole sulfamoxol
|
||||
nl sulfamoxole and trimethoprim sulfamoxol met trimethoprim
|
||||
nl sulfaperin sulfaperine
|
||||
nl sulfaphenazole sulfafenazol
|
||||
nl sulfathiazole sulfathiazol
|
||||
nl sulfathiourea sulfathioureum
|
||||
nl sulfonamides, combinations with other antibacterials (excl, trimethoprim) sulfonamiden met andere antibacteriele middelen (exc trim)
|
||||
nl sultamicillin sultamicilline
|
||||
nl talampicillin talampicilline
|
||||
nl teicoplanin teicoplanine
|
||||
nl telithromycin telitromycine
|
||||
nl temafloxacin temafloxacine
|
||||
nl temocillin temocilline
|
||||
nl tenofovir disoproxil tenofovir
|
||||
nl terizidone terizidon
|
||||
nl tetanus antitoxin serum tegen tetanus
|
||||
nl tetanus immunoglobulin tetanusimmunoglobuline
|
||||
nl tetanus toxoid tetanustoxoide
|
||||
nl tetanus toxoid, combinations with diphtheria toxoid tetanustoxoide met difterietoxoide
|
||||
nl tetanus toxoid, combinations with tetanus immunoglobulin tetanustoxoide met tetanusimmunoglobuline
|
||||
nl thiamphenicol thiamfenicol
|
||||
nl thiamphenicol, combinations thiamfenicol combinatiepreparaten
|
||||
nl thioacetazone and isoniazid thioacetazon met isoniazide
|
||||
nl ticarcillin ticarcilline
|
||||
nl ticarcillin and beta-lactamase inhibitor ticarcilline met enzymremmer
|
||||
nl tinidazole tinidazol
|
||||
nl tobramycin tobramycine
|
||||
nl troleandomycin troleandomycine
|
||||
nl trovafloxacin trovafloxacine
|
||||
nl tuberculosis, live attenuated bacillus calmette guerin, levend verzwakt
|
||||
nl typhoid, combinations with paratyphi types buiktyfus met paratyfus-typen
|
||||
nl typhoid, inactivated, whole cell buiktyfus, geinactiveerd, hele cel
|
||||
nl typhoid, oral, live attenuated buiktyfus, oraal, levend verzwakt
|
||||
nl typhoid, purified polysaccharide antigen buiktyfus, gezuiverd polysaccharidenantigeen
|
||||
nl typhoid-hepatitis A buiktyfus-hepatitis A
|
||||
nl typhus exanthematicus, inactivated, whole cell vlektyfus, geinactiveerd, hele cel
|
||||
nl vaccinia immunoglobulin vaccinia-immunoglobuline
|
||||
nl vancomycin vancomycine
|
||||
nl varicella, live attenuated varicella, levend verzwakt
|
||||
nl varicella/zoster immunoglobulin varicella-zoster-immunoglobuline
|
||||
nl voriconazole voriconazol
|
||||
nl yellow fever, live attenuated gele koorts, levend verzwakt
|
||||
nl Clindamycin Clindamycine
|
||||
nl Clometocillin Clometocilline
|
||||
nl Clotrimazole Clotrimazol
|
||||
nl Cloxacillin Cloxacilline
|
||||
nl Colistin Colistine
|
||||
nl Dapsone Dapson
|
||||
nl Daptomycin Daptomycine
|
||||
nl Dibekacin Dibekacine
|
||||
nl Dicloxacillin Dicloxacilline
|
||||
nl Dirithromycin Diritromycine
|
||||
nl Econazole Econazol
|
||||
nl Enoxacin Enoxacine
|
||||
nl Epicillin Epicilline
|
||||
nl Erythromycin Erytromycine
|
||||
nl Ethambutol/isoniazid Ethambutol/isoniazide
|
||||
nl Fleroxacin Fleroxacine
|
||||
nl Flucloxacillin Flucloxacilline
|
||||
nl Fluconazole Fluconazol
|
||||
nl Flucytosine Fluorocytosine
|
||||
nl Flurithromycin Fluritromycine
|
||||
nl Fosfomycin Fosfomycine
|
||||
nl Fusidic acid Fusidinezuur
|
||||
nl Gatifloxacin Gatifloxacine
|
||||
nl Gemifloxacin Gemifloxacine
|
||||
nl Gentamicin Gentamicine
|
||||
nl Grepafloxacin Grepafloxacine
|
||||
nl Hachimycin Hachimycine
|
||||
nl Hetacillin Hetacilline
|
||||
nl Imipenem/cilastatin Imipenem/enzymremmer
|
||||
nl Inosine pranobex Inosiplex
|
||||
nl Isepamicin Isepamicine
|
||||
nl Isoconazole Isoconazol
|
||||
nl Isoniazid Isoniazide
|
||||
nl Itraconazole Itraconazol
|
||||
nl Josamycin Josamycine
|
||||
nl Kanamycin Kanamycine
|
||||
nl Ketoconazole Ketoconazol
|
||||
nl Levofloxacin Levofloxacine
|
||||
nl Lincomycin Lincomycine
|
||||
nl Lomefloxacin Lomefloxacine
|
||||
nl Lysozyme Lysozym
|
||||
nl Mandelic acid Amandelzuur
|
||||
nl Metampicillin Metampicilline
|
||||
nl Meticillin Meticilline
|
||||
nl Metisazone Metisazon
|
||||
nl Metronidazole Metronidazol
|
||||
nl Mezlocillin Mezlocilline
|
||||
nl Micafungin Micafungine
|
||||
nl Miconazole Miconazol
|
||||
nl Midecamycin Midecamycine
|
||||
nl Miocamycin Miocamycine
|
||||
nl Moxifloxacin Moxifloxacine
|
||||
nl Mupirocin Mupirocine
|
||||
nl Nalidixic acid Nalidixinezuur
|
||||
nl Neomycin Neomycine
|
||||
nl Netilmicin Netilmicine
|
||||
nl Nitrofurantoin Nitrofurantoine
|
||||
nl Norfloxacin Norfloxacine
|
||||
nl Novobiocin Novobiocine
|
||||
nl Nystatin Nystatine
|
||||
nl Ofloxacin Ofloxacine
|
||||
nl Oleandomycin Oleandomycine
|
||||
nl Ornidazole Ornidazol
|
||||
nl Oxacillin Oxacilline
|
||||
nl Oxolinic acid Oxolinezuur
|
||||
nl Oxytetracycline Oxytetracycline
|
||||
nl Pazufloxacin Pazufloxacine
|
||||
nl Pefloxacin Pefloxacine
|
||||
nl Penamecillin Penamecilline
|
||||
nl Penicillin Penicilline
|
||||
nl Pheneticillin Feneticilline
|
||||
nl Phenoxymethylpenicillin Fenoxymethylpenicilline
|
||||
nl Pipemidic acid Pipemidinezuur
|
||||
nl Piperacillin Piperacilline
|
||||
nl Piperacillin/beta-lactamase inhibitor Piperacilline/enzymremmer
|
||||
nl Piromidic acid Piromidinezuur
|
||||
nl Pivampicillin Pivampicilline
|
||||
nl Polymyxin B Polymyxine B
|
||||
nl Posaconazole Posaconazol
|
||||
nl Pristinamycin Pristinamycine
|
||||
nl Procaine benzylpenicillin Benzylpenicillineprocaine
|
||||
nl Propicillin Propicilline
|
||||
nl Prulifloxacin Prulifloxacine
|
||||
nl Quinupristin/dalfopristin Quinupristine/dalfopristine
|
||||
nl Ribostamycin Ribostamycine
|
||||
nl Rifabutin Rifabutine
|
||||
nl Rifampicin Rifampicine
|
||||
nl Rifampicin, pyrazinamide, ethambutol/isoniazid Rifampicine/pyrazinamide, ethambutol en isoniazide
|
||||
nl Rifampicin, pyrazinamide/isoniazid Rifampicine/pyrazinamide en isoniazide
|
||||
nl Rifampicin/isoniazid Rifampicine/isoniazide
|
||||
nl Rifamycin Rifamycine
|
||||
nl Rifaximin Rifaximine
|
||||
nl Rokitamycin Rokitamycine
|
||||
nl Rosoxacin Rosoxacine
|
||||
nl Roxithromycin Roxitromycine
|
||||
nl Rufloxacin Rufloxacine
|
||||
nl Sisomicin Sisomicine
|
||||
nl Sodium aminosalicylate Aminosalicylzuur,4- (na-zout)
|
||||
nl Sparfloxacin Sparfloxacine
|
||||
nl Spectinomycin Spectinomycine
|
||||
nl Spiramycin Spiramycine
|
||||
nl Spiramycin/metronidazole Spiramycine/andere antibacteriele middelen
|
||||
nl Staphylococcus immunoglobulin Stafylokokkenimmunoglobuline
|
||||
nl Streptoduocin Streptoduocine
|
||||
nl Streptomycin Streptomycine
|
||||
nl Streptomycin/isoniazid Streptomycine/isoniazide
|
||||
nl Sulbenicillin Sulbenicilline
|
||||
nl Sulfadiazine/tetroxoprim Sulfadiazine/tetroxoprim
|
||||
nl Sulfadiazine/trimethoprim Sulfadiazine/trimethoprim
|
||||
nl Sulfadimidine/trimethoprim Sulfadimidine/trimethoprim
|
||||
nl Sulfafurazole Sulfafurazol
|
||||
nl Sulfaisodimidine Sulfisomidine
|
||||
nl Sulfalene Sulfaleen
|
||||
nl Sulfamazone Sulfamazon
|
||||
nl Sulfamerazine/trimethoprim Sulfamerazine/trimethoprim
|
||||
nl Sulfamethizole Sulfamethizol
|
||||
nl Sulfamethoxazole Sulfamethoxazol
|
||||
nl Sulfamethoxazole/trimethoprim Sulfamethoxazol/trimethoprim
|
||||
nl Sulfametoxydiazine Sulfamethoxydiazine
|
||||
nl Sulfametrole/trimethoprim Sulfametrol/trimethoprim
|
||||
nl Sulfamoxole Sulfamoxol
|
||||
nl Sulfamoxole/trimethoprim Sulfamoxol/trimethoprim
|
||||
nl Sulfaperin Sulfaperine
|
||||
nl Sulfaphenazole Sulfafenazol
|
||||
nl Sulfathiazole Sulfathiazol
|
||||
nl Sulfathiourea Sulfathioureum
|
||||
nl Sultamicillin Sultamicilline
|
||||
nl Talampicillin Talampicilline
|
||||
nl Teicoplanin Teicoplanine
|
||||
nl Telithromycin Telitromycine
|
||||
nl Temafloxacin Temafloxacine
|
||||
nl Temocillin Temocilline
|
||||
nl Tenofovir disoproxil Tenofovir
|
||||
nl Terizidone Terizidon
|
||||
nl Thiamphenicol Thiamfenicol
|
||||
nl Thiamphenicol Thiamfenicol combinatiepreparaten
|
||||
nl Thioacetazone/isoniazid Thioacetazon/isoniazide
|
||||
nl Ticarcillin Ticarcilline
|
||||
nl Ticarcillin/beta-lactamase inhibitor Ticarcilline/enzymremmer
|
||||
nl Tinidazole Tinidazol
|
||||
nl Tobramycin Tobramycine
|
||||
nl Troleandomycin Troleandomycine
|
||||
nl Trovafloxacin Trovafloxacine
|
||||
nl Vancomycin Vancomycine
|
||||
nl Voriconazole Voriconazol
|
||||
|
||||
|
Can't render this file because it has a wrong number of fields in line 157.
|
@ -22,8 +22,8 @@ On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://
|
||||
}
|
||||
|
||||
\examples{
|
||||
as.atc("meropenem")
|
||||
atc_name("J01DH02")
|
||||
as.ab("meropenem")
|
||||
ab_name("J01DH02")
|
||||
|
||||
atc_tradenames("flucloxacillin")
|
||||
ab_tradenames("flucloxacillin")
|
||||
}
|
||||
|
||||
@ -15,7 +15,7 @@ Strings will be translated to foreign languages if they are defined in a local t
|
||||
|
||||
\code{system.file("translations.tsv", package = "AMR")}
|
||||
|
||||
This file will be read by all functions where a translated output can be desired, like all \code{\link{mo_property}} functions (\code{\link{mo_fullname}}, \code{\link{mo_type}}, etc.). Please suggest your own translations \href{https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation suggestion}{by creating a new issue on our repository}.
|
||||
This file will be read by all functions where a translated output can be desired, like all \code{\link{mo_property}} functions (\code{\link{mo_fullname}}, \code{\link{mo_type}}, etc.). Please suggest your own translations \href{https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation\%20suggestion}{by creating a new issue on our repository}.
|
||||
|
||||
The system language will be used at default, if supported, using \code{\link{get_locale}}. The system language can be overwritten with \code{\link{getOption}("AMR_locale")}.
|
||||
}
|
||||
|
||||
@ -285,7 +285,7 @@ antibiotics[which(antibiotics$ab == "LTM"), "abbreviations"][[1]] <- list(c("MOX
|
||||
antibiotics <- filter(antibiotics, ab != "MOX")
|
||||
# ESBL E-test codes:
|
||||
antibiotics[which(antibiotics$ab == "CCV"), "abbreviations"][[1]] <- list(c("xtzl"))
|
||||
antibiotics[which(antibiotics$ab == "CAZ"), "abbreviations"][[1]] <- list(c(antibiotics[which(antibiotics$ab == "CAZ"), "abbreviations"][[1]], "xtz"))
|
||||
antibiotics[which(antibiotics$ab == "CAZ"), "abbreviations"][[1]] <- list(c(antibiotics[which(antibiotics$ab == "CAZ"), "abbreviations"][[1]], "xtz", "cefta"))
|
||||
antibiotics[which(antibiotics$ab == "CPC"), "abbreviations"][[1]] <- list(c("xpml"))
|
||||
antibiotics[which(antibiotics$ab == "FEP"), "abbreviations"][[1]] <- list(c(antibiotics[which(antibiotics$ab == "FEP"), "abbreviations"][[1]], "xpm"))
|
||||
antibiotics[which(antibiotics$ab == "CTC"), "abbreviations"][[1]] <- list(c("xctl"))
|
||||
@ -295,3 +295,4 @@ class(antibiotics$ab) <- "ab"
|
||||
class(antibiotics$atc) <- "atc"
|
||||
|
||||
usethis::use_data(antibiotics, overwrite = TRUE)
|
||||
rm(antibiotics)
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user