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mdro fix
This commit is contained in:
parent
68cc7ef0d0
commit
fcc77164e9
@ -1,6 +1,6 @@
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Package: AMR
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Package: AMR
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Version: 0.6.1.9003
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Version: 0.6.1.9003
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Date: 2019-05-10
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Date: 2019-05-11
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Title: Antimicrobial Resistance Analysis
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Title: Antimicrobial Resistance Analysis
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Authors@R: c(
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Authors@R: c(
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person(
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person(
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@ -26,7 +26,7 @@
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#'
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#'
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#' \code{system.file("translations.tsv", package = "AMR")}
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#' \code{system.file("translations.tsv", package = "AMR")}
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#'
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#'
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#' This file will be read by all functions where a translated output can be desired, like all \code{\link{mo_property}} functions (\code{\link{mo_fullname}}, \code{\link{mo_type}}, etc.). Please suggest your own translations \href{https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation suggestion}{by creating a new issue on our repository}.
|
#' This file will be read by all functions where a translated output can be desired, like all \code{\link{mo_property}} functions (\code{\link{mo_fullname}}, \code{\link{mo_type}}, etc.). Please suggest your own translations \href{https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation\%20suggestion}{by creating a new issue on our repository}.
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#'
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#'
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#' The system language will be used at default, if supported, using \code{\link{get_locale}}. The system language can be overwritten with \code{\link{getOption}("AMR_locale")}.
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#' The system language will be used at default, if supported, using \code{\link{get_locale}}. The system language can be overwritten with \code{\link{getOption}("AMR_locale")}.
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#' @inheritSection AMR Read more on our website!
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#' @inheritSection AMR Read more on our website!
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15
R/mdro.R
15
R/mdro.R
@ -321,15 +321,12 @@ mdro <- function(x,
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& !ab_missing(CIP)
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& !ab_missing(CIP)
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& !ab_missing(CAZ)
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& !ab_missing(CAZ)
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& !ab_missing(TZP) ) {
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& !ab_missing(TZP) ) {
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tbl_ <- tbl_ %>% mutate(
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tbl_$psae <- 0
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psae = 0,
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tbl_[which(tbl_[, MEM] == "R" | tbl_[, IPM] == "R"), "psae"] <- 1 + tbl_[which(tbl_[, MEM] == "R" | tbl_[, IPM] == "R"), "psae"]
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psae = ifelse(MEM == "R" | IPM == "R", psae + 1, psae),
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tbl_[which(tbl_[, GEN] == "R" & tbl_[, TOB] == "R"), "psae"] <- 1 + tbl_[which(tbl_[, GEN] == "R" & tbl_[, TOB] == "R"), "psae"]
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psae = ifelse(GEN == "R" & TOB == "R", psae + 1, psae),
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tbl_[which(tbl_[, CIP] == "R"), "psae"] <- 1 + tbl_[which(tbl_[, CIP] == "R"), "psae"]
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psae = ifelse(CIP == "R", psae + 1, psae),
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tbl_[which(tbl_[, CAZ] == "R"), "psae"] <- 1 + tbl_[which(tbl_[, CAZ] == "R"), "psae"]
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psae = ifelse(CAZ == "R", psae + 1, psae),
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tbl_[which(tbl_[, TZP] == "R"), "psae"] <- 1 + tbl_[which(tbl_[, TZP] == "R"), "psae"]
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psae = ifelse(TZP == "R", psae + 1, psae),
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psae = ifelse(is.na(psae), 0, psae)
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)
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} else {
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} else {
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tbl_$psae <- 0
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tbl_$psae <- 0
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}
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}
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@ -33,8 +33,8 @@
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#' @name WHOCC
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#' @name WHOCC
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#' @rdname WHOCC
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#' @rdname WHOCC
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#' @examples
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#' @examples
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#' as.atc("meropenem")
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#' as.ab("meropenem")
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#' atc_name("J01DH02")
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#' ab_name("J01DH02")
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#'
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#'
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#' atc_tradenames("flucloxacillin")
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#' ab_tradenames("flucloxacillin")
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NULL
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NULL
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Binary file not shown.
@ -80,7 +80,7 @@
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</button>
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</button>
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<span class="navbar-brand">
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<span class="navbar-brand">
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<a class="navbar-link" href="../index.html">AMR (for R)</a>
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<a class="navbar-link" href="../index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9003</span>
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</span>
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</span>
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</div>
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</div>
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@ -145,7 +145,7 @@
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</a>
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</a>
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</li>
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</li>
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<li>
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<li>
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<a href="../reference/atc_property.html">
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<a href="../reference/ab_property.html">
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<span class="fa fa-capsules"></span>
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<span class="fa fa-capsules"></span>
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Get properties of an antibiotic
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Get properties of an antibiotic
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@ -258,10 +258,10 @@ This package contains <strong>all ~500 antimicrobial drugs</strong> and their An
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<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
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<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
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<pre class="examples"><span class='co'># NOT RUN {</span>
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<pre class="examples"><span class='co'># NOT RUN {</span>
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<span class='fu'><a href='as.atc.html'>as.atc</a></span>(<span class='st'>"meropenem"</span>)
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<span class='fu'><a href='as.ab.html'>as.ab</a></span>(<span class='st'>"meropenem"</span>)
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<span class='fu'><a href='atc_property.html'>atc_name</a></span>(<span class='st'>"J01DH02"</span>)
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<span class='fu'><a href='ab_property.html'>ab_name</a></span>(<span class='st'>"J01DH02"</span>)
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|
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<span class='fu'><a href='atc_property.html'>atc_tradenames</a></span>(<span class='st'>"flucloxacillin"</span>)
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<span class='fu'><a href='ab_property.html'>ab_tradenames</a></span>(<span class='st'>"flucloxacillin"</span>)
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<span class='co'># }</span></pre>
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<span class='co'># }</span></pre>
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</div>
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</div>
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<div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
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<div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
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@ -247,7 +247,7 @@
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<p>Strings will be translated to foreign languages if they are defined in a local translation file. This file comes with this package and can be found when running:</p>
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<p>Strings will be translated to foreign languages if they are defined in a local translation file. This file comes with this package and can be found when running:</p>
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<p><code><a href='https://www.rdocumentation.org/packages/base/topics/system.file'>system.file("translations.tsv", package = "AMR")</a></code></p>
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<p><code><a href='https://www.rdocumentation.org/packages/base/topics/system.file'>system.file("translations.tsv", package = "AMR")</a></code></p>
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<p>This file will be read by all functions where a translated output can be desired, like all <code><a href='mo_property.html'>mo_property</a></code> functions (<code><a href='mo_property.html'>mo_fullname</a></code>, <code><a href='mo_property.html'>mo_type</a></code>, etc.). Please suggest your own translations <a href='https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation suggestion'>by creating a new issue on our repository</a>.</p>
|
<p>This file will be read by all functions where a translated output can be desired, like all <code><a href='mo_property.html'>mo_property</a></code> functions (<code><a href='mo_property.html'>mo_fullname</a></code>, <code><a href='mo_property.html'>mo_type</a></code>, etc.). Please suggest your own translations <a href='https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation%20suggestion'>by creating a new issue on our repository</a>.</p>
|
||||||
<p>The system language will be used at default, if supported, using <code>get_locale</code>. The system language can be overwritten with <code><a href='https://www.rdocumentation.org/packages/base/topics/options'>getOption</a>("AMR_locale")</code>.</p>
|
<p>The system language will be used at default, if supported, using <code>get_locale</code>. The system language can be overwritten with <code><a href='https://www.rdocumentation.org/packages/base/topics/options'>getOption</a>("AMR_locale")</code>.</p>
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|
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<h2 class="hasAnchor" id="read-more-on-our-website-"><a class="anchor" href="#read-more-on-our-website-"></a>Read more on our website!</h2>
|
<h2 class="hasAnchor" id="read-more-on-our-website-"><a class="anchor" href="#read-more-on-our-website-"></a>Read more on our website!</h2>
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@ -154,303 +154,204 @@ pt vegetative vegetativo FALSE FALSE
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pt ([([ ]*?)group \\1grupo FALSE FALSE
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pt ([([ ]*?)group \\1grupo FALSE FALSE
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pt ([([ ]*?)Group \\1Grupo FALSE FALSE
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pt ([([ ]*?)Group \\1Grupo FALSE FALSE
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nl 4-aminosalicylic acid aminosalicylzuur
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nl 4-aminosalicylic acid 4-aminosalicylzuur
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nl adefovir dipivoxil adefovir
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nl Adefovir dipivoxil Adefovir
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nl aldesulfone sodium aldesulfon
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nl Aldesulfone sodium Aldesulfon
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nl amikacin amikacine
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nl Amikacin Amikacine
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nl amoxicillin amoxicilline
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nl Amoxicillin Amoxicilline
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nl amoxicillin and beta-lactamase inhibitor amoxicilline met enzymremmer
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nl Amoxicillin/beta-lactamase inhibitor Amoxicilline/enzymremmer
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nl amphotericin B amfotericine B
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nl Amphotericin B Amfotericine B
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nl ampicillin ampicilline
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nl Ampicillin Ampicilline
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nl ampicillin and beta-lactamase inhibitor ampicilline met enzymremmer
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nl Ampicillin/beta-lactamase inhibitor Ampicilline/enzymremmer
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nl ampicillin, combinations ampicilline, combinatiepreparaten
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nl Anidulafungin Anidulafungine
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nl anidulafungin anidulafungine
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nl Azidocillin Azidocilline
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nl anthrax antigen anthrax-antigeen
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nl Azithromycin Azitromycine
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nl anti-d (rh) immunoglobulin rhesus(d)immunoglobuline
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nl Azlocillin Azlocilline
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nl azidocillin azidocilline
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nl Bacampicillin Bacampicilline
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nl azithromycin azitromycine
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nl Bacitracin Bacitracine
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nl azlocillin azlocilline
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nl Benzathine benzylpenicillin Benzylpenicillinebenzathine
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nl bacampicillin bacampicilline
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nl Benzathine phenoxymethylpenicillin Fenoxymethylpenicillinebenzathine
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nl bacitracin bacitracine
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nl Benzylpenicillin Benzylpenicilline
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nl benzathine benzylpenicillin benzylpenicillinebenzathine
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nl Calcium aminosalicylate Aminosalicylzuur
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nl benzathine phenoxymethylpenicillin fenoxymethylpenicillinebenzathine
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nl Capreomycin Capreomycine
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nl benzylpenicillin benzylpenicilline
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nl Carbenicillin Carbenicilline
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nl botulinum antitoxin serum tegen botulisme
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nl Carindacillin Carindacilline
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nl brucella antigen brucella-antigeen
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nl Caspofungin Caspofungine
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nl calcium aminosalicylate aminosalicylzuur
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nl Cefacetrile Cefacetril
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nl capreomycin capreomycine
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nl Cefalexin Cefalexine
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nl carbenicillin carbenicilline
|
nl Cefalotin Cefalotine
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nl carindacillin carindacilline
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nl Cefamandole Cefamandol
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nl caspofungin caspofungine
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nl Cefapirin Cefapirine
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nl cefacetrile cefacetril
|
nl Cefazedone Cefazedon
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nl cefalexin cefalexine
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nl Cefazolin Cefazoline
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nl cefalotin cefalotine
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nl Cefepime Cefepim
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nl cefamandole cefamandol
|
nl Cefixime Cefixim
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nl cefapirin cefapirine
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nl Cefmenoxime Cefmenoxim
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nl cefazedone cefazedon
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nl Cefmetazole Cefmetazol
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nl cefazolin cefazoline
|
nl Cefodizime Cefodizim
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nl cefepime cefepim
|
nl Cefonicid Cefonicide
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nl cefixime cefixim
|
nl Cefoperazone Cefoperazon
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nl cefmenoxime cefmenoxim
|
nl Cefoperazone/beta-lactamase inhibitor Cefoperazon combinatiepreparaten
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nl cefmetazole cefmetazol
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nl Cefotaxime Cefotaxim
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nl cefodizime cefodizim
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nl Cefoxitin Cefoxitine
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nl cefonicid cefonicide
|
nl Cefpirome Cefpirom
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nl cefoperazone cefoperazon
|
nl Cefpodoxime Cefpodoxim
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nl cefoperazone and beta-lactamase inhibitor cefoperazon combinatiepreparaten
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nl Cefsulodin Cefsulodine
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nl cefotaxime cefotaxim
|
nl Ceftazidime Ceftazidim
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nl cefoxitin cefoxitine
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nl Ceftezole Ceftezol
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nl cefpirome cefpirom
|
nl Ceftizoxime Ceftizoxim
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nl cefpodoxime cefpodoxim
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nl Ceftriaxone Ceftriaxon
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nl cefsulodin cefsulodine
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nl Cefuroxime Cefuroxim
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nl ceftazidime ceftazidim
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nl Cefuroxime/metronidazole Cefuroxim/andere antibacteriele middelen
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nl ceftezole ceftezol
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nl Chloramphenicol Chlooramfenicol
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nl ceftizoxime ceftizoxim
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nl Chlortetracycline Chloortetracycline
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nl ceftriaxone ceftriaxon
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nl Cinoxacin Cinoxacine
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nl ceftriaxone, combinations ceftriaxon, combinatiepreparaten
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nl Ciprofloxacin Ciprofloxacine
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nl cefuroxime cefuroxim
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nl Clarithromycin Claritromycine
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nl cefuroxime and metronidazole cefuroxim met andere antibacteriele middelen
|
nl Clavulanic acid Clavulaanzuur
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nl chloramphenicol chlooramfenicol
|
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nl chlortetracycline chloortetracycline
|
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nl cholera, combinations with typhoid vaccine, inactivated, whole cell choleravaccin met tyfusvaccin, geinactiveerd, hele cel
|
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nl cholera, inactivated, whole cell cholera, geinactiveerd, hele cel
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nl cholera, live attenuated cholera, levend verzwakt
|
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nl cinoxacin cinoxacine
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nl ciprofloxacin ciprofloxacine
|
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nl clarithromycin claritromycine
|
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nl clavulanic acid clavulaanzuur
|
nl clavulanic acid clavulaanzuur
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nl clindamycin clindamycine
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nl Clindamycin Clindamycine
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nl clometocillin clometocilline
|
nl Clometocillin Clometocilline
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nl clotrimazole clotrimazol
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nl Clotrimazole Clotrimazol
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nl cloxacillin cloxacilline
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nl Cloxacillin Cloxacilline
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nl colistin colistine
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nl Colistin Colistine
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nl combinations combinatiepreparaten
|
nl Dapsone Dapson
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nl combinations combinatiepreparaten
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nl Daptomycin Daptomycine
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nl combinations combinatiepreparaten
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nl Dibekacin Dibekacine
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nl combinations combinatiepreparaten
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nl Dicloxacillin Dicloxacilline
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nl combinations combinatiepreparaten
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nl Dirithromycin Diritromycine
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nl combinations combinatiepreparaten
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nl Econazole Econazol
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nl combinations combinatiepreparaten
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nl Enoxacin Enoxacine
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nl combinations of penicillins combinatiepreparaten
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nl Epicillin Epicilline
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nl combinations of tetracyclines tetracycline combinatiepreparaten
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nl Erythromycin Erytromycine
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nl cytomegalovirus immunoglobulin cytomegalie-immunoglobuline
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nl Ethambutol/isoniazid Ethambutol/isoniazide
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nl dapsone dapson
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nl Fleroxacin Fleroxacine
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nl daptomycin daptomycine
|
nl Flucloxacillin Flucloxacilline
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nl dibekacin dibekacine
|
nl Fluconazole Fluconazol
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nl dicloxacillin dicloxacilline
|
nl Flucytosine Fluorocytosine
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nl diphtheria antitoxin serum tegen difterie
|
nl Flurithromycin Fluritromycine
|
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nl diphtheria immunoglobulin difterie-immunoglobuline
|
nl Fosfomycin Fosfomycine
|
||||||
nl diphtheria toxoid difterietoxoide
|
nl Fusidic acid Fusidinezuur
|
||||||
nl diphtheria-hemophilus influenzae b-pertussis-poliomyelitis-tetanus difterie-haemophilus-kinkhoest-poliomyelitis-tetanus
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nl Gatifloxacin Gatifloxacine
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||||||
nl diphtheria-hemophilus influenzae b-pertussis-poliomyelitis-tetanus-hepatitis B difterie-haemophilus-kinkhoest-polio-tetanus-hepatitis B
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nl Gemifloxacin Gemifloxacine
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||||||
nl diphtheria-hemophilus influenzae b-pertussis-tetanus-hepatitis B difterie-haemophilus-kinkhoest-tetanus-hepatitis B
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nl Gentamicin Gentamicine
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nl diphtheria-hepatitis b-pertussis-tetanus difterie-hepatitis b-kinkhoest-tetanus
|
nl Grepafloxacin Grepafloxacine
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||||||
nl diphtheria-hepatitis b-tetanus difterie-hepatitis b-tetanus
|
nl Hachimycin Hachimycine
|
||||||
nl diphtheria-pertussis-poliomyelitis-tetanus difterie-kinkhoest-poliomyelitis-tetanus
|
nl Hetacillin Hetacilline
|
||||||
nl diphtheria-pertussis-poliomyelitis-tetanus-hepatitis B difterie-kinkhoest-poliomyelitis-tetanus-hepatitis B
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nl Imipenem/cilastatin Imipenem/enzymremmer
|
||||||
nl diphtheria-poliomyelitis-tetanus difterie-poliomyelitis-tetanus
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nl Inosine pranobex Inosiplex
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||||||
nl diphtheria-rubella-tetanus difterie-rubella-tetanus
|
nl Isepamicin Isepamicine
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nl dirithromycin diritromycine
|
nl Isoconazole Isoconazol
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nl econazole econazol
|
nl Isoniazid Isoniazide
|
||||||
nl encephalitis, japanese, inactivated, whole virus japanse-encefalitis, geinactiveerd, intact virus
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nl Itraconazole Itraconazol
|
||||||
nl encephalitis, tick borne immunoglobulin teken-encephalitis-immunoglobuline
|
nl Josamycin Josamycine
|
||||||
nl encephalitis, tick borne, inactivated, whole virus tekenencefalitis, geinactiveerd, intact virus
|
nl Kanamycin Kanamycine
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nl enoxacin enoxacine
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nl Ketoconazole Ketoconazol
|
||||||
nl epicillin epicilline
|
nl Levofloxacin Levofloxacine
|
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nl erythromycin erytromycine
|
nl Lincomycin Lincomycine
|
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nl ethambutol and isoniazid ethambutol met isoniazide
|
nl Lomefloxacin Lomefloxacine
|
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nl fleroxacin fleroxacine
|
nl Lysozyme Lysozym
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||||||
nl flucloxacillin flucloxacilline
|
nl Mandelic acid Amandelzuur
|
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nl fluconazole fluconazol
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nl Metampicillin Metampicilline
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nl flucytosine fluorocytosine
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nl Meticillin Meticilline
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nl flurithromycin fluritromycine
|
nl Metisazone Metisazon
|
||||||
nl fosfomycin fosfomycine
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nl Metronidazole Metronidazol
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nl fusidic acid fusidinezuur
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nl Mezlocillin Mezlocilline
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nl gas-gangrene sera serum tegen gasgangreen
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nl Micafungin Micafungine
|
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nl gatifloxacin gatifloxacine
|
nl Miconazole Miconazol
|
||||||
nl gemifloxacin gemifloxacine
|
nl Midecamycin Midecamycine
|
||||||
nl gentamicin gentamicine
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nl Miocamycin Miocamycine
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nl grepafloxacin grepafloxacine
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nl Moxifloxacin Moxifloxacine
|
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nl hachimycin hachimycine
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nl Mupirocin Mupirocine
|
||||||
nl hemophilus influenzae B and hepatitis B haemophilus influenzae b-hepatitis B
|
nl Nalidixic acid Nalidixinezuur
|
||||||
nl hemophilus influenzae B and poliomyelitis haemophilus influenzae b-poliomyelitis
|
nl Neomycin Neomycine
|
||||||
nl hemophilus influenzae B, combinations with pertussis and toxoids haemophilus influenzae B met kinkhoest en toxoiden
|
nl Netilmicin Netilmicine
|
||||||
nl hemophilus influenzae B, combinations with toxoids haemophilus influenzae B met toxoiden
|
nl Nitrofurantoin Nitrofurantoine
|
||||||
nl hemophilus influenzae B, purified antigen conjugated haemophilus influenzae B, gezuiverd geconjugeerd antigeen
|
nl Norfloxacin Norfloxacine
|
||||||
nl hepatitis A immunoglobulin hepatitis a-immunoglobuline
|
nl Novobiocin Novobiocine
|
||||||
nl hepatitis A, inactivated, whole virus hepatitis A, geinactiveerd, intact virus
|
nl Nystatin Nystatine
|
||||||
nl hepatitis B immunoglobulin hepatitis b-immunoglobuline
|
nl Ofloxacin Ofloxacine
|
||||||
nl hepatitis B, purified antigen hepatitis B, gezuiverd antigeen
|
nl Oleandomycin Oleandomycine
|
||||||
nl hetacillin hetacilline
|
nl Ornidazole Ornidazol
|
||||||
nl imipenem and cilastatin imipenem met enzymremmer
|
nl Oxacillin Oxacilline
|
||||||
nl immunoglobulins, normal human, for extravascular adm, immunoglobuline, normaal, extravasculair
|
nl Oxolinic acid Oxolinezuur
|
||||||
nl immunoglobulins, normal human, for intravascular adm, immunoglobuline, normaal, intravasculair
|
nl Oxytetracycline Oxytetracycline
|
||||||
nl influenza, inactivated, split virus or surface antigen influenza, gezuiverd antigeen
|
nl Pazufloxacin Pazufloxacine
|
||||||
nl influenza, inactivated, whole virus influenza, geinactiveerd, intact virus
|
nl Pefloxacin Pefloxacine
|
||||||
nl inosine pranobex inosiplex
|
nl Penamecillin Penamecilline
|
||||||
nl isepamicin isepamicine
|
nl Penicillin Penicilline
|
||||||
nl isoconazole isoconazol
|
nl Pheneticillin Feneticilline
|
||||||
nl isoniazid isoniazide
|
nl Phenoxymethylpenicillin Fenoxymethylpenicilline
|
||||||
nl isoniazid, combinations isoniazide, combinatiepreparaten
|
nl Pipemidic acid Pipemidinezuur
|
||||||
nl itraconazole itraconazol
|
nl Piperacillin Piperacilline
|
||||||
nl josamycin josamycine
|
nl Piperacillin/beta-lactamase inhibitor Piperacilline/enzymremmer
|
||||||
nl kanamycin kanamycine
|
nl Piromidic acid Piromidinezuur
|
||||||
nl ketoconazole ketoconazol
|
nl Pivampicillin Pivampicilline
|
||||||
nl levofloxacin levofloxacine
|
nl Polymyxin B Polymyxine B
|
||||||
nl lincomycin lincomycine
|
nl Posaconazole Posaconazol
|
||||||
nl lomefloxacin lomefloxacine
|
nl Pristinamycin Pristinamycine
|
||||||
nl lysozyme lysozym
|
nl Procaine benzylpenicillin Benzylpenicillineprocaine
|
||||||
nl mandelic acid amandelzuur
|
nl Propicillin Propicilline
|
||||||
nl measles immunoglobulin mazelenimmunoglobuline
|
nl Prulifloxacin Prulifloxacine
|
||||||
nl measles, combinations with mumps and rubella, live attenuated mazelen met bof en rubella, levend verzwakt
|
nl Quinupristin/dalfopristin Quinupristine/dalfopristine
|
||||||
nl measles, combinations with mumps, live attenuated mazelen met bof, levend verzwakt
|
nl Ribostamycin Ribostamycine
|
||||||
nl measles, combinations with mumps, rubella and varicella, live attenuated mazelen met bof, rubella en varicella, levend verzwakt
|
nl Rifabutin Rifabutine
|
||||||
nl measles, combinations with rubella, live attenuated mazelen met rubella, levend verzwakt
|
nl Rifampicin Rifampicine
|
||||||
nl measles, live attenuated mazelen, levend verzwakt
|
nl Rifampicin, pyrazinamide, ethambutol/isoniazid Rifampicine/pyrazinamide, ethambutol en isoniazide
|
||||||
nl meningococcus A, purified polysaccharides antigen meningokok A, gezuiverd polysaccharidenantigeen
|
nl Rifampicin, pyrazinamide/isoniazid Rifampicine/pyrazinamide en isoniazide
|
||||||
nl meningococcus A,c, bivalent purified polysaccharides antigen meningokok, 2 typen, gezuiverd polysaccharidenantigeen
|
nl Rifampicin/isoniazid Rifampicine/isoniazide
|
||||||
nl meningococcus A,c,y,w-135, tetravalent purified polysaccharides antigen meningokok, 4 typen, gezuiverd polysaccharidenantigeen
|
nl Rifamycin Rifamycine
|
||||||
nl meningococcus B, outer membrane vesicle vaccine meningokok B, buitenmembraanvaccin
|
nl Rifaximin Rifaximine
|
||||||
nl meningococcus C, purified polysaccharides antigen conjugated meningokok C, gezuiverd saccharidenantigeen geconjugeerd
|
nl Rokitamycin Rokitamycine
|
||||||
nl metampicillin metampicilline
|
nl Rosoxacin Rosoxacine
|
||||||
nl meticillin meticilline
|
nl Roxithromycin Roxitromycine
|
||||||
nl metisazone metisazon
|
nl Rufloxacin Rufloxacine
|
||||||
nl metronidazole metronidazol
|
nl Sisomicin Sisomicine
|
||||||
nl mezlocillin mezlocilline
|
nl Sodium aminosalicylate Aminosalicylzuur,4- (na-zout)
|
||||||
nl micafungin micafungine
|
nl Sparfloxacin Sparfloxacine
|
||||||
nl miconazole miconazol
|
nl Spectinomycin Spectinomycine
|
||||||
nl midecamycin midecamycine
|
nl Spiramycin Spiramycine
|
||||||
nl miocamycin miocamycine
|
nl Spiramycin/metronidazole Spiramycine/andere antibacteriele middelen
|
||||||
nl moxifloxacin moxifloxacine
|
nl Staphylococcus immunoglobulin Stafylokokkenimmunoglobuline
|
||||||
nl mumps immunoglobulin bofimmunoglobuline
|
nl Streptoduocin Streptoduocine
|
||||||
nl mumps, live attenuated bof, levend verzwakt
|
nl Streptomycin Streptomycine
|
||||||
nl mupirocin mupirocine
|
nl Streptomycin/isoniazid Streptomycine/isoniazide
|
||||||
nl nalidixic acid nalidixinezuur
|
nl Sulbenicillin Sulbenicilline
|
||||||
nl neomycin neomycine
|
nl Sulfadiazine/tetroxoprim Sulfadiazine/tetroxoprim
|
||||||
nl netilmicin netilmicine
|
nl Sulfadiazine/trimethoprim Sulfadiazine/trimethoprim
|
||||||
nl nitrofurantoin nitrofurantoine
|
nl Sulfadimidine/trimethoprim Sulfadimidine/trimethoprim
|
||||||
nl norfloxacin norfloxacine
|
nl Sulfafurazole Sulfafurazol
|
||||||
nl novobiocin novobiocine
|
nl Sulfaisodimidine Sulfisomidine
|
||||||
nl nystatin nystatine
|
nl Sulfalene Sulfaleen
|
||||||
nl ofloxacin ofloxacine
|
nl Sulfamazone Sulfamazon
|
||||||
nl oleandomycin oleandomycine
|
nl Sulfamerazine/trimethoprim Sulfamerazine/trimethoprim
|
||||||
nl ornidazole ornidazol
|
nl Sulfamethizole Sulfamethizol
|
||||||
nl other meningococcal monovalent purified polysaccharides antigen meningokok, 1 type, gezuiverd polysaccaridenantigeen
|
nl Sulfamethoxazole Sulfamethoxazol
|
||||||
nl other meningococcal polyvalent purified polysaccharides antigen meningokok, meer typen, gezuiverd polysaccharidenantigeen
|
nl Sulfamethoxazole/trimethoprim Sulfamethoxazol/trimethoprim
|
||||||
nl oxacillin oxacilline
|
nl Sulfametoxydiazine Sulfamethoxydiazine
|
||||||
nl oxolinic acid oxolinezuur
|
nl Sulfametrole/trimethoprim Sulfametrol/trimethoprim
|
||||||
nl oxytetracycline, combinations oxytetracycline, combinatiepreparaten
|
nl Sulfamoxole Sulfamoxol
|
||||||
nl pazufloxacin pazufloxacine
|
nl Sulfamoxole/trimethoprim Sulfamoxol/trimethoprim
|
||||||
nl pefloxacin pefloxacine
|
nl Sulfaperin Sulfaperine
|
||||||
nl penamecillin penamecilline
|
nl Sulfaphenazole Sulfafenazol
|
||||||
nl penicillins, combinations with other antibacterials penicillines met andere antibacteriele middelen
|
nl Sulfathiazole Sulfathiazol
|
||||||
nl pertussis immunoglobulin kinkhoestimmunoglobuline
|
nl Sulfathiourea Sulfathioureum
|
||||||
nl pertussis, inactivated, whole cell pertussis, geinactiveerd, hele cel
|
nl Sultamicillin Sultamicilline
|
||||||
nl pertussis, inactivated, whole cell, combinations with toxoids pertussis, geinactiveerd hele cel, met toxoiden
|
nl Talampicillin Talampicilline
|
||||||
nl pertussis, purified antigen pertussis, gezuiverd antigeen
|
nl Teicoplanin Teicoplanine
|
||||||
nl pertussis, purified antigen, combinations with toxoids pertussis, gezuiverd antigeen, met toxoiden
|
nl Telithromycin Telitromycine
|
||||||
nl pheneticillin feneticilline
|
nl Temafloxacin Temafloxacine
|
||||||
nl phenoxymethylpenicillin fenoxymethylpenicilline
|
nl Temocillin Temocilline
|
||||||
nl pipemidic acid pipemidinezuur
|
nl Tenofovir disoproxil Tenofovir
|
||||||
nl piperacillin piperacilline
|
nl Terizidone Terizidon
|
||||||
nl piperacillin and beta-lactamase inhibitor piperacilline met enzymremmer
|
nl Thiamphenicol Thiamfenicol
|
||||||
nl piromidic acid piromidinezuur
|
nl Thiamphenicol Thiamfenicol combinatiepreparaten
|
||||||
nl pivampicillin pivampicilline
|
nl Thioacetazone/isoniazid Thioacetazon/isoniazide
|
||||||
nl plague, inactivated, whole cell yersinia pestis, geinactiveerd, hele cel
|
nl Ticarcillin Ticarcilline
|
||||||
nl pneumococcus, purified polysaccharides antigen pneumokok, gezuiverd polysaccharidenantigeen
|
nl Ticarcillin/beta-lactamase inhibitor Ticarcilline/enzymremmer
|
||||||
nl pneumococcus, purified polysaccharides antigen conjugated pneumokok, gezuiverd geconjugeerd polysaccharidenantigeen
|
nl Tinidazole Tinidazol
|
||||||
nl poliomyelitis oral, monovalent, live attenuated poliomyelitis, oraal, 1 type, levend verzwakt
|
nl Tobramycin Tobramycine
|
||||||
nl poliomyelitis oral, trivalent, live attenuated poliomyelitis, oraal, 3 typen, levend verzwakt
|
nl Troleandomycin Troleandomycine
|
||||||
nl poliomyelitis, trivalent, inactivated, whole virus poliomyelitis, 3 typen, geinactiveerd, intact virus
|
nl Trovafloxacin Trovafloxacine
|
||||||
nl polymyxin B polymyxine B
|
nl Vancomycin Vancomycine
|
||||||
nl posaconazole posaconazol
|
nl Voriconazole Voriconazol
|
||||||
nl pristinamycin pristinamycine
|
|
||||||
nl procaine benzylpenicillin benzylpenicillineprocaine
|
|
||||||
nl propicillin propicilline
|
|
||||||
nl prulifloxacin prulifloxacine
|
|
||||||
nl quinupristin/dalfopristin quinupristine/dalfopristine
|
|
||||||
nl rabies immunoglobulin rabiesimmunoglobuline
|
|
||||||
nl rabies serum serum tegen rabies
|
|
||||||
nl rabies, inactivated, whole virus rabies, geinactiveerd, intact virus
|
|
||||||
nl ribostamycin ribostamycine
|
|
||||||
nl rifabutin rifabutine
|
|
||||||
nl rifampicin rifampicine
|
|
||||||
nl rifampicin and isoniazid rifampicine met isoniazide
|
|
||||||
nl rifampicin, pyrazinamide and isoniazid rifampicine met pyrazinamide en isoniazide
|
|
||||||
nl rifampicin, pyrazinamide, ethambutol and isoniazid rifampicine met pyrazinamide, ethambutol en isoniazide
|
|
||||||
nl rifamycin rifamycine
|
|
||||||
nl rifaximin rifaximine
|
|
||||||
nl rokitamycin rokitamycine
|
|
||||||
nl rosoxacin rosoxacine
|
|
||||||
nl rota virus, live attenuated rotavirus, levend verzwakt
|
|
||||||
nl roxithromycin roxitromycine
|
|
||||||
nl rubella immunoglobulin rubella-immunoglobuline
|
|
||||||
nl rubella, combinations with mumps, live attenuated rubella met bof, levend verzwakt
|
|
||||||
nl rubella, live attenuated rubella, levend verzwakt
|
|
||||||
nl rufloxacin rufloxacine
|
|
||||||
nl sisomicin sisomicine
|
|
||||||
nl snake venom antiserum serum tegen slangebeet
|
|
||||||
nl sodium aminosalicylate aminosalicylzuur,4- (na-zout)
|
|
||||||
nl sparfloxacin sparfloxacine
|
|
||||||
nl spectinomycin spectinomycine
|
|
||||||
nl spiramycin spiramycine
|
|
||||||
nl spiramycin and metronidazole spiramycine met andere antibacteriele middelen
|
|
||||||
nl staphylococcus immunoglobulin stafylokokkenimmunoglobuline
|
|
||||||
nl streptoduocin streptoduocine
|
|
||||||
nl streptomycin streptomycine
|
|
||||||
nl streptomycin and isoniazid streptomycine met isoniazide
|
|
||||||
nl sulbenicillin sulbenicilline
|
|
||||||
nl sulfadiazine and tetroxoprim sulfadiazine met tetroxoprim
|
|
||||||
nl sulfadiazine and trimethoprim sulfadiazine met trimethoprim
|
|
||||||
nl sulfadimidine and trimethoprim sulfadimidine met trimethoprim
|
|
||||||
nl sulfafurazole sulfafurazol
|
|
||||||
nl sulfaisodimidine sulfisomidine
|
|
||||||
nl sulfalene sulfaleen
|
|
||||||
nl sulfamazone sulfamazon
|
|
||||||
nl sulfamerazine and trimethoprim sulfamerazine met trimethoprim
|
|
||||||
nl sulfamethizole sulfamethizol
|
|
||||||
nl sulfamethoxazole sulfamethoxazol
|
|
||||||
nl sulfamethoxazole and trimethoprim sulfamethoxazol met trimethoprim
|
|
||||||
nl sulfametoxydiazine sulfamethoxydiazine
|
|
||||||
nl sulfametrole and trimethoprim sulfametrol met trimethoprim
|
|
||||||
nl sulfamoxole sulfamoxol
|
|
||||||
nl sulfamoxole and trimethoprim sulfamoxol met trimethoprim
|
|
||||||
nl sulfaperin sulfaperine
|
|
||||||
nl sulfaphenazole sulfafenazol
|
|
||||||
nl sulfathiazole sulfathiazol
|
|
||||||
nl sulfathiourea sulfathioureum
|
|
||||||
nl sulfonamides, combinations with other antibacterials (excl, trimethoprim) sulfonamiden met andere antibacteriele middelen (exc trim)
|
|
||||||
nl sultamicillin sultamicilline
|
|
||||||
nl talampicillin talampicilline
|
|
||||||
nl teicoplanin teicoplanine
|
|
||||||
nl telithromycin telitromycine
|
|
||||||
nl temafloxacin temafloxacine
|
|
||||||
nl temocillin temocilline
|
|
||||||
nl tenofovir disoproxil tenofovir
|
|
||||||
nl terizidone terizidon
|
|
||||||
nl tetanus antitoxin serum tegen tetanus
|
|
||||||
nl tetanus immunoglobulin tetanusimmunoglobuline
|
|
||||||
nl tetanus toxoid tetanustoxoide
|
|
||||||
nl tetanus toxoid, combinations with diphtheria toxoid tetanustoxoide met difterietoxoide
|
|
||||||
nl tetanus toxoid, combinations with tetanus immunoglobulin tetanustoxoide met tetanusimmunoglobuline
|
|
||||||
nl thiamphenicol thiamfenicol
|
|
||||||
nl thiamphenicol, combinations thiamfenicol combinatiepreparaten
|
|
||||||
nl thioacetazone and isoniazid thioacetazon met isoniazide
|
|
||||||
nl ticarcillin ticarcilline
|
|
||||||
nl ticarcillin and beta-lactamase inhibitor ticarcilline met enzymremmer
|
|
||||||
nl tinidazole tinidazol
|
|
||||||
nl tobramycin tobramycine
|
|
||||||
nl troleandomycin troleandomycine
|
|
||||||
nl trovafloxacin trovafloxacine
|
|
||||||
nl tuberculosis, live attenuated bacillus calmette guerin, levend verzwakt
|
|
||||||
nl typhoid, combinations with paratyphi types buiktyfus met paratyfus-typen
|
|
||||||
nl typhoid, inactivated, whole cell buiktyfus, geinactiveerd, hele cel
|
|
||||||
nl typhoid, oral, live attenuated buiktyfus, oraal, levend verzwakt
|
|
||||||
nl typhoid, purified polysaccharide antigen buiktyfus, gezuiverd polysaccharidenantigeen
|
|
||||||
nl typhoid-hepatitis A buiktyfus-hepatitis A
|
|
||||||
nl typhus exanthematicus, inactivated, whole cell vlektyfus, geinactiveerd, hele cel
|
|
||||||
nl vaccinia immunoglobulin vaccinia-immunoglobuline
|
|
||||||
nl vancomycin vancomycine
|
|
||||||
nl varicella, live attenuated varicella, levend verzwakt
|
|
||||||
nl varicella/zoster immunoglobulin varicella-zoster-immunoglobuline
|
|
||||||
nl voriconazole voriconazol
|
|
||||||
nl yellow fever, live attenuated gele koorts, levend verzwakt
|
|
||||||
|
|||||||
|
Can't render this file because it has a wrong number of fields in line 157.
|
@ -22,8 +22,8 @@ On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://
|
|||||||
}
|
}
|
||||||
|
|
||||||
\examples{
|
\examples{
|
||||||
as.atc("meropenem")
|
as.ab("meropenem")
|
||||||
atc_name("J01DH02")
|
ab_name("J01DH02")
|
||||||
|
|
||||||
atc_tradenames("flucloxacillin")
|
ab_tradenames("flucloxacillin")
|
||||||
}
|
}
|
||||||
|
|||||||
@ -15,7 +15,7 @@ Strings will be translated to foreign languages if they are defined in a local t
|
|||||||
|
|
||||||
\code{system.file("translations.tsv", package = "AMR")}
|
\code{system.file("translations.tsv", package = "AMR")}
|
||||||
|
|
||||||
This file will be read by all functions where a translated output can be desired, like all \code{\link{mo_property}} functions (\code{\link{mo_fullname}}, \code{\link{mo_type}}, etc.). Please suggest your own translations \href{https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation suggestion}{by creating a new issue on our repository}.
|
This file will be read by all functions where a translated output can be desired, like all \code{\link{mo_property}} functions (\code{\link{mo_fullname}}, \code{\link{mo_type}}, etc.). Please suggest your own translations \href{https://gitlab.com/msberends/AMR/issues/new?issue[title]=Translation\%20suggestion}{by creating a new issue on our repository}.
|
||||||
|
|
||||||
The system language will be used at default, if supported, using \code{\link{get_locale}}. The system language can be overwritten with \code{\link{getOption}("AMR_locale")}.
|
The system language will be used at default, if supported, using \code{\link{get_locale}}. The system language can be overwritten with \code{\link{getOption}("AMR_locale")}.
|
||||||
}
|
}
|
||||||
|
|||||||
@ -285,7 +285,7 @@ antibiotics[which(antibiotics$ab == "LTM"), "abbreviations"][[1]] <- list(c("MOX
|
|||||||
antibiotics <- filter(antibiotics, ab != "MOX")
|
antibiotics <- filter(antibiotics, ab != "MOX")
|
||||||
# ESBL E-test codes:
|
# ESBL E-test codes:
|
||||||
antibiotics[which(antibiotics$ab == "CCV"), "abbreviations"][[1]] <- list(c("xtzl"))
|
antibiotics[which(antibiotics$ab == "CCV"), "abbreviations"][[1]] <- list(c("xtzl"))
|
||||||
antibiotics[which(antibiotics$ab == "CAZ"), "abbreviations"][[1]] <- list(c(antibiotics[which(antibiotics$ab == "CAZ"), "abbreviations"][[1]], "xtz"))
|
antibiotics[which(antibiotics$ab == "CAZ"), "abbreviations"][[1]] <- list(c(antibiotics[which(antibiotics$ab == "CAZ"), "abbreviations"][[1]], "xtz", "cefta"))
|
||||||
antibiotics[which(antibiotics$ab == "CPC"), "abbreviations"][[1]] <- list(c("xpml"))
|
antibiotics[which(antibiotics$ab == "CPC"), "abbreviations"][[1]] <- list(c("xpml"))
|
||||||
antibiotics[which(antibiotics$ab == "FEP"), "abbreviations"][[1]] <- list(c(antibiotics[which(antibiotics$ab == "FEP"), "abbreviations"][[1]], "xpm"))
|
antibiotics[which(antibiotics$ab == "FEP"), "abbreviations"][[1]] <- list(c(antibiotics[which(antibiotics$ab == "FEP"), "abbreviations"][[1]], "xpm"))
|
||||||
antibiotics[which(antibiotics$ab == "CTC"), "abbreviations"][[1]] <- list(c("xctl"))
|
antibiotics[which(antibiotics$ab == "CTC"), "abbreviations"][[1]] <- list(c("xctl"))
|
||||||
@ -295,3 +295,4 @@ class(antibiotics$ab) <- "ab"
|
|||||||
class(antibiotics$atc) <- "atc"
|
class(antibiotics$atc) <- "atc"
|
||||||
|
|
||||||
usethis::use_data(antibiotics, overwrite = TRUE)
|
usethis::use_data(antibiotics, overwrite = TRUE)
|
||||||
|
rm(antibiotics)
|
||||||
|
|||||||
Loading…
x
Reference in New Issue
Block a user