custom mo update

DESCRIPTION

@@ -1,5 +1,5 @@
 Package: AMR
-Version: 1.8.2.9070
+Version: 1.8.2.9071
 Date: 2022-12-27
 Title: Antimicrobial Resistance Data Analysis
 Description: Functions to simplify and standardise antimicrobial resistance (AMR)

NEWS.md

@@ -1,4 +1,4 @@
-# AMR 1.8.2.9070
+# AMR 1.8.2.9071
 
 *(this beta version will eventually become v2.0! We're happy to reach a new major milestone soon!)*
 
@@ -12,7 +12,7 @@ This is a new major release of the AMR package, with great new additions but als
 * 20 new antibiotics added and updated all DDDs and ATC codes
 * Extended support for antiviral agents (`antivirals` data set), with many new functions
 * Now available in 16 languages
-* Many new interesting functions, such as `rsi_confidence_interval()` and `mean_amr_distance()`
+* Many new interesting functions, such as `rsi_confidence_interval()` and `mean_amr_distance()`, and `add_custom_microorganisms()` to add custom microorganisms to this package
 * Many small bug fixes
 
 ## New
@@ -35,6 +35,8 @@ The `microorganisms` no longer relies on the Catalogue of Life, but on the List
 
 We previously relied on our own experience to categorise species into pathogenic groups, but we were very happy to encounter the very recent work of Bartlett *et al.* (2022, DOI [10.1099/mic.0.001269](https://doi.org/10.1099/mic.0.001269)) who extensively studied medical-scientific literature to categorise all bacterial species into groups. See `mo_matching_score()` on how their work was incorporated into the `prevalence` column of the `microorganisms` data set. Using their results, the `as.mo()` and all `mo_*()` functions are now much better capable of converting user input to valid taxonomic records.
 
+The new function `add_custom_microorganisms()` allows users to add custom microorganisms to the `AMR` package.
+
 We also made the following changes regarding the included taxonomy or microorganisms functions:
 
 * Updated full microbiological taxonomy according to the latest daily LPSN data set (December 2022) and latest yearly GBIF taxonomy backbone (November 2022)

_pkgdown.yml

@@ -130,6 +130,7 @@ reference:
     contents:
     - "`as.mo`"
     - "`mo_property`"
+    - "`add_custom_microorganisms`"
     - "`mo_source`"
 
   - title: "Preparing data: antibiotics"