P281424/AMR
1
0 Fork 0
mirror of https://github.com/msberends/AMR.git synced 2026-11-16 00:10:57 +01:00
Code Releases Activity
1,852 Commits 5 Branches 31 Tags
08aa47842e17781d74ffeb2cc267cbdec7cae524
Commit Graph
12 Commits
Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 08aa47842e (v3.0.1.9152) Let a named colours_SIR without S, I or R use the default colours for these, which fixes the example of ggplot_sir() with colours = c(SI = "yellow"), let ggplot_sir() pass the facet as a value to facet_sir(), and make the test of the eucast_I default independent of the AMR_guideline option 2026-10-16 04:34:52 +02:00
dr. M.S. (Matthijs) Berends 0efc8826c8 Let aggregated analyses follow the guideline for the 'I' category in count_df(), proportion_df(), sir_df(), the plotting functions, antibiogram(), wisca(), and bug_drug_combinations(), deprecate combine_SI in favour of guideline, fix format() on bug_drug_combinations() counting I as resistant, and add a shared section 'Interpretation of SIR' 2026-10-15 09:58:21 +02:00
dr. M.S. (Matthijs) Berends dbd95ffa46 (v3.0.1.9137) Add the guideline argument to count_df(), proportion_df(), sir_df(), ggplot_sir(), geom_sir(), and labels_sir_count(), so that with CLSI the 'I' category is merged with R, and describe in the documentation of get_AMR_locale() that LANG takes precedence over LANGUAGE 2026-10-15 08:25:37 +02:00
Matthijs Berends 2c33297cf6 new eucast breakpoints parsing 2026-08-20 13:29:16 +01:00
dr. M.S. (Matthijs) Berends 40d7a971c3 (v2.1.1.9236) documentation 2025-04-12 11:46:42 +02:00
dr. M.S. (Matthijs) Berends 36fd99e1f4 (v2.1.1.9235) New website! 2025-04-08 15:54:30 +01:00
dr. M.S. (Matthijs) Berends 8deaf2c8eb (v2.1.1.9224) skip tests on cran 2025-03-20 23:29:21 +01:00
dr. M.S. (Matthijs) Berends 58d7aa8790 (v2.1.1.9199) fix eucast 2025-03-14 13:43:22 +01:00
dr. M.S. (Matthijs) Berends f7938289eb (v2.1.1.9186) replace antibiotics with antimicrobials! 2025-03-07 20:43:26 +01:00
dr. M.S. (Matthijs) Berends 07efc292bc (v2.1.1.9163) cleanup 2025-02-27 14:04:29 +01:00
dr. M.S. (Matthijs) Berends d94efb0f5e (v2.1.1.9147) scale fixes and WISCA update, fix conserved capped values 2025-02-14 14:16:46 +01:00
dr. M.S. (Matthijs) Berends f03933940c (v2.1.1.9131) implement testthat 2025-01-27 21:43:10 +01:00