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python-wrapper

sir-s3-update

#109

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#192

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v3.0.1

3f29ba1e23 Built site for AMR@3.0.1.9085: c4069da gh-pages github-actions 2026-07-09 19:19:14 +00:00
4f7764858c Python wrapper update python-wrapper github-actions[bot] 2026-07-09 19:08:11 +00:00
c4069da61f (v3.0.1.9085) website main dr. M.S. (Matthijs) Berends 2026-07-09 21:05:33 +02:00
91acb769c9 Built site for AMR@3.0.1.9084: 9237bfb github-actions 2026-07-09 15:31:07 +00:00
9237bfbc19 (v3.0.1.9084) Fix breakpoint infer rules dr. M.S. (Matthijs) Berends 2026-07-09 17:14:59 +02:00
2fc13ce76c Built site for AMR@3.0.1.9083: ea996c8 github-actions 2026-07-03 17:54:12 +00:00
ea996c8361 (v3.0.1.9083) website dr. M.S. (Matthijs) Berends 2026-07-03 19:41:16 +02:00
400965f4d0 Built site for AMR@3.0.1.9082: 65445bc github-actions 2026-07-03 17:25:25 +00:00
65445bcfbe (v3.0.1.9082) website dr. M.S. (Matthijs) Berends 2026-07-03 19:11:40 +02:00
c4b2718c5c Built site for AMR@3.0.1.9081: e23d7b4 github-actions 2026-06-27 13:42:45 +00:00
e23d7b4c45 (v3.0.1.9081) fix mo dr. M.S. (Matthijs) Berends 2026-06-27 15:33:08 +02:00
76f7401c43 Built site for AMR@3.0.1.9080: 5184253 github-actions 2026-06-27 13:32:36 +00:00
518425311e (v3.0.1.9080) fix(as.mo): resolve abbreviated genus when species has subspecies (#288 follow-up) (#301) Matthijs Berends 2026-06-27 15:20:38 +02:00
35262bb822 Built site for AMR@3.0.1.9079: 03be4b8 github-actions 2026-06-27 12:41:31 +00:00
03be4b87fc (v3.0.1.9079) docs: rename remaining 'antibiotic selectors'/'AB selectors' to 'antimicrobial selectors'/'AMR selectors' Matthijs Berends 2026-06-27 14:31:58 +02:00
2556c457ce Built site for AMR@3.0.1.9078: 12cabca github-actions 2026-06-27 12:02:38 +00:00
12cabca29d (v3.0.1.9076) fix: normalise year-qualified AMR_guideline option in all affected functions Matthijs Berends 2026-06-27 13:53:25 +02:00
169659837d Built site for AMR@3.0.1.9077: f7d3533 github-actions 2026-06-26 19:49:26 +00:00
f7d353361c improve top_n_microorganisms(): add property_for_each, fix property=NULL, enforce rank order (#297) Matthijs Berends 2026-06-26 21:40:11 +02:00
108afaca6f Built site for AMR@3.0.1.9076: 02bd9a7 github-actions 2026-06-26 13:14:09 +00:00
02bd9a71c1 (v3.0.1.9076) document Python installation channels and enforce_method in vignette (#296) Matthijs Berends 2026-06-26 15:03:07 +02:00
f17152b9da Built site for AMR@3.0.1.9075: 5f63723 github-actions 2026-06-26 10:15:27 +00:00
a7dc3ed0d7 Built site for AMR@3.0.1.9074: 3c17679 github-actions 2026-06-26 10:07:44 +00:00
5f6372342e (v3.0.1.9075) another go dr. M.S. (Matthijs) Berends 2026-06-26 12:06:12 +02:00
ebfb414ab1 Built site for AMR@3.0.1.9073: 4ca7fdf github-actions 2026-06-26 10:00:02 +00:00
3c17679382 (v3.0.1.9074) You go girl dr. M.S. (Matthijs) Berends 2026-06-26 11:58:38 +02:00
4ca7fdf3d4 (v3.0.1.9073) yet another go dr. M.S. (Matthijs) Berends 2026-06-26 11:51:08 +02:00
6edae2037a (v3.0.1.9072) fix py again dr. M.S. (Matthijs) Berends 2026-06-26 11:47:11 +02:00
3a960de6ea Built site for AMR@3.0.1.9071: 61e1fbf github-actions 2026-06-26 09:45:33 +00:00
61e1fbf1e0 (v3.0.1.9071) fix python wrapper dr. M.S. (Matthijs) Berends 2026-06-26 11:35:30 +02:00
d5b7929b36 Built site for AMR@3.0.1.9070: 637ada9 github-actions 2026-06-26 07:36:21 +00:00
637ada920b (v3.0.1.9070) Fix #293, update EUCAST rules for PEF dr. M.S. (Matthijs) Berends 2026-06-26 08:56:59 +02:00
3802119599 Built site for AMR@3.0.1.9069: 4fac683 github-actions 2026-06-24 18:38:33 +00:00
4fac683fac (v3.0.1.9069) fix Python wrapper dr. M.S. (Matthijs) Berends 2026-06-24 20:27:39 +02:00
8f9d658c13 Built site for AMR@3.0.1.9068: b6c1c26 github-actions 2026-06-24 18:13:08 +00:00
b6c1c26a5d (v3.0.1.9068) todo tracker update dr. M.S. (Matthijs) Berends 2026-06-24 20:01:25 +02:00
99f55f2ec2 Built site for AMR@3.0.1.9067: 935071a github-actions 2026-06-24 17:55:11 +00:00
935071ae01 (v3.0.1.9067) todo tracker update dr. M.S. (Matthijs) Berends 2026-06-24 19:43:02 +02:00
a88150ca4a (v3.0.1.9066) fix documentation dr. M.S. (Matthijs) Berends 2026-06-24 19:34:47 +02:00
c89dafb556 Built site for AMR@3.0.1.9065: 39b6a25 github-actions 2026-06-24 17:08:22 +00:00
39b6a250de (v3.0.1.9065) fix example isolates data dr. M.S. (Matthijs) Berends 2026-06-24 18:36:47 +02:00
bd63794136 (v3.0.1.9064) Documentation updates dr. M.S. (Matthijs) Berends 2026-06-24 18:32:08 +02:00
b3b6a798ae Built site for AMR@3.0.1.9063: c7b17e5 github-actions 2026-06-24 08:37:34 +00:00
c7b17e5833 (v3.0.1.9063) fix old R version dr. M.S. (Matthijs) Berends 2026-06-24 10:22:56 +02:00
ab38fb911d (v3.0.1.9062) Fix older R versions dr. M.S. (Matthijs) Berends 2026-06-24 10:19:15 +02:00
2a7bfb9ffb Built site for AMR@3.0.1.9061: 0c1709c github-actions 2026-06-23 18:00:14 +00:00
0c1709c999 (v3.0.1.9061) WISCA refix dr. M.S. (Matthijs) Berends 2026-06-23 19:43:54 +02:00
fd90b2c250 (v3.0.1.9060) WISCA fix dr. M.S. (Matthijs) Berends 2026-06-23 19:27:40 +02:00
9898b5df4b (v3.0.1.9059) Fix WISCA in vignette dr. M.S. (Matthijs) Berends 2026-06-23 14:38:59 +02:00
3f9f931777 (v3.0.1.9059) Update taxonomy of microorganisms Matthijs Berends 2026-06-23 01:38:13 +02:00
9447e0f2c2 Built site for AMR@3.0.1.9057: 0af3f84 github-actions 2026-05-02 13:06:13 +00:00
0af3f84655 (v3.0.1.9057) website fix dr. M.S. (Matthijs) Berends 2026-05-02 14:56:26 +02:00
64753e9a16 Revamp beta NEWS.md section: concise, user-focused, telegram style (#284) Matthijs Berends 2026-05-02 10:31:33 +01:00
24f24ecaf8 Generalise interpretive rules for multi-guideline support (#268) (#283) Matthijs Berends 2026-05-01 18:38:51 +01:00
6fbd9e4b9f Built site for AMR@3.0.1.9055: f7e9294 github-actions 2026-04-30 17:52:11 +00:00
f7e9294bea Add parallel computing support to antibiogram() and wisca() (#281) (#282) Matthijs Berends 2026-04-30 18:41:56 +01:00
3a3027f171 Built site for AMR@3.0.1.9053: 23beebc github-actions 2026-04-30 08:07:42 +00:00
23beebc6c3 Migrate parallel computing in as.sir() from parallel:: to future/future.apply (#280) Matthijs Berends 2026-04-30 08:57:19 +01:00
425f4ad827 Built site for AMR@3.0.1.9052: 3f1b20c github-actions 2026-04-25 14:29:32 +00:00
3f1b20c304 (v3.0.1.9052) fix NEWS dr. M.S. (Matthijs) Berends 2026-04-25 16:21:31 +02:00
905dea2cf1 (v3.0.1.9051) fix NEWS dr. M.S. (Matthijs) Berends 2026-04-25 16:20:34 +02:00
e12355b4a8 Built site for AMR@3.0.1.9050: 8261b91 github-actions 2026-04-25 12:49:42 +00:00
8261b91b24 Fix custom reference_data support in as.sir() (#239) (PR #279) Matthijs Berends 2026-04-25 14:38:01 +02:00
cc4e9bab4b Built site for AMR@3.0.1.9050: 19157ce github-actions 2026-04-24 22:45:21 +00:00
19157ce718 Fix parallel computing in as.sir.data.frame (#276) Matthijs Berends 2026-04-25 00:34:38 +02:00
fdef91486c Built site for AMR@3.0.1.9048: e7780b6 github-actions 2026-04-22 06:33:22 +00:00
e7780b6d5f (v3.0.1.9048) fix #275 dr. M.S. (Matthijs) Berends 2026-04-22 08:16:44 +02:00
5dec3cfd25 Built site for AMR@3.0.1.9047: e0f8cf0 github-actions 2026-04-21 20:32:21 +00:00
e0f8cf0882 (v3.0.1.9047) fix #272 dr. M.S. (Matthijs) Berends 2026-04-21 22:11:40 +02:00
86b5ebf61f Built site for AMR@3.0.1.9045: 8ff5d44 github-actions 2026-04-21 20:03:58 +00:00
8ff5d4472a Add add_if_missing parameter to control NA handling in interpretive rules (#264) Matthijs Berends 2026-04-21 21:53:43 +02:00
f2e56dbc61 Built site for AMR@3.0.1.9044: fb8758f github-actions 2026-04-05 15:36:36 +00:00
fb8758f36b fix: convert Python lists to R vectors in wrapper generator (#270) Matthijs Berends 2026-04-05 17:26:21 +02:00
6d9934ac04 Built site for AMR@3.0.1.9044: 6c24718 github-actions 2026-04-04 10:03:48 +00:00
6c24718893 (v3.0.1.9044) fix old R version dr. M.S. (Matthijs) Berends 2026-04-04 11:51:50 +02:00
59b2ce5621 Built site for AMR@3.0.1.9043: 2254931 github-actions 2026-04-02 10:32:06 +00:00
225493192c (v3.0.1.9043) fix unit test dr. M.S. (Matthijs) Berends 2026-04-02 12:24:12 +02:00
d0fd6aa2cc Built site for AMR@3.0.1.9042: 26613d7 github-actions 2026-04-02 09:54:05 +00:00
26613d774b (v3.0.1.9042) add EUCAST breakpoint table v16 to interpretive_rules() dr. M.S. (Matthijs) Berends 2026-04-02 11:42:19 +02:00
d6c59896e9 Built site for AMR@3.0.1.9041: 3a736bc github-actions 2026-03-30 08:18:09 +00:00
3a736bc484 (v3.0.1.9041) add breakpoints 2026 dr. M.S. (Matthijs) Berends 2026-03-30 10:01:49 +02:00
d55d073ae9 Built site for AMR@3.0.1.9040: 9c95aa4 github-actions 2026-03-24 12:34:17 +00:00
9c95aa455c (v3.0.1.9040) fix MIC plotting dr. M.S. (Matthijs) Berends 2026-03-24 12:44:47 +01:00
2a8a1eda97 (v3.0.1.9039) cli fixes dr. M.S. (Matthijs) Berends 2026-03-23 10:38:28 +01:00
330f1a9dfe Built site for AMR@3.0.1.9038: 975a690 github-actions 2026-03-22 21:31:11 +00:00
975a690c10 (v3.0.1.9038) fix format inline dr. M.S. (Matthijs) Berends 2026-03-22 22:16:59 +01:00
c95646d39c Built site for AMR@3.0.1.9037: 3d1412e github-actions 2026-03-22 19:55:49 +00:00
3d1412e8c9 (v3.0.1.9037) improve cli messages dr. M.S. (Matthijs) Berends 2026-03-22 20:44:37 +01:00
3560dfd611 Built site for AMR@3.0.1.9036: 4171d5b github-actions 2026-03-20 16:11:30 +00:00
4171d5b778 (v3.0.0.9036) Modernise messaging infrastructure to use cli markup (#265) Matthijs Berends 2026-03-20 17:01:34 +01:00
ba003f3e23 Built site for AMR@3.0.1.9035: 8439e9c github-actions 2026-03-18 09:45:05 +00:00
8439e9c1d2 (v3.0.1.9035) fix loading in Positron dr. M.S. (Matthijs) Berends 2026-03-18 10:32:11 +01:00
33e262ed9b Built site for AMR@3.0.1.9034: 4dc3ec0 github-actions 2026-03-11 15:20:20 +00:00
4dc3ec0008 (v3.0.1.9034) Add amr_course() dr. M.S. (Matthijs) Berends 2026-03-11 16:07:31 +01:00
86a53a0901 Built site for AMR@3.0.1.9033: 353eaa3 github-actions 2026-03-09 11:08:33 +00:00
353eaa3f38 (v3.0.1.9033) add ionophores(), clorobiocin, aminocoumarins group dr. M.S. (Matthijs) Berends 2026-03-09 11:57:36 +01:00
e7e8aa636e Built site for AMR@3.0.1.9032: cba315c github-actions 2026-03-08 19:46:45 +00:00
cba315c2e7 (v3.0.1.9032) fix unit tests dr. M.S. (Matthijs) Berends 2026-03-08 20:36:15 +01:00
1e81c2a013 Built site for AMR@3.0.1.9031: b6f8584 github-actions 2026-03-08 10:40:48 +00:00
b6f8584994 (v3.0.1.9031) fix MDRO for non-RStudio terminal dr. M.S. (Matthijs) Berends 2026-03-08 11:30:18 +01:00