Commit Graph - AMR

P281424/AMR

Fork 0

mirror of https://github.com/msberends/AMR.git synced 2025-09-15 09:49:48 +02:00

Commit Graph

Select branches

Hide Pull Requests

gh-pages

main

python-wrapper

sir-s3-update

#109

#117

#134

#181

#192

#205

#212

#221

#226

#226

#65

#67

#68

#71

#72

#77

#93

#97

v0.1.0

v0.1.1

v0.2.0

v0.3.0

v0.4.0

v0.5.0

v0.6.0

v0.6.1

v0.7.0

v0.7.1

v0.8.0

v0.9.0

v1.0.0

v1.0.1

v1.1.0

v1.2.0

v1.3.0

v1.4.0

v1.5.0

v1.6.0

v1.7.0

v1.7.1

v1.8.0

v1.8.1

v1.8.2

v2.0.0

v2.1.0

v2.1.1

v3.0.0

122bca0f95 (v2.1.1.9158) updated as.ab dr. M.S. (Matthijs) Berends 2025-02-26 13:32:16 +01:00
195dfb4b91 (v2.1.1.9157) improved as.ab(), fixed knit_print of antibiogram dr. M.S. (Matthijs) Berends 2025-02-26 13:27:20 +01:00
892b43a567 Built site for AMR@2.1.1.9156: b10989f github-actions 2025-02-23 18:25:48 +00:00
b10989f431 (v2.1.1.9156) fix for knitr in WISCA dr. M.S. (Matthijs) Berends 2025-02-23 19:18:42 +01:00
aa8f6af185 (v2.1.1.9155) new mic_p50() and mic_p90() - updated AMR intro dr. M.S. (Matthijs) Berends 2025-02-23 11:18:08 +01:00
026593f316 Built site for AMR@2.1.1.9154: 226d10f github-actions 2025-02-22 21:15:13 +00:00
226d10f546 (v2.1.1.9154) documentation fix dr. M.S. (Matthijs) Berends 2025-02-22 22:07:56 +01:00
e672d889c9 Built site for AMR@2.1.1.9153: abb5602 github-actions 2025-02-22 20:34:20 +00:00
abb5602532 (v2.1.1.9153) mic plot fix dr. M.S. (Matthijs) Berends 2025-02-22 21:26:38 +01:00
9694bcf9b0 Built site for AMR@2.1.1.9152: 671d657 github-actions 2025-02-18 08:48:17 +00:00
671d657fd8 (v2.1.1.9152) MIC plot fix dr. M.S. (Matthijs) Berends 2025-02-18 08:07:02 +01:00
31e255491c Built site for AMR@2.1.1.9151: ef02f4a github-actions 2025-02-15 20:00:11 +00:00
ef02f4a7f2 (v2.1.1.9151) update readme dr. M.S. (Matthijs) Berends 2025-02-15 20:53:12 +01:00
db65f851b3 Built site for AMR@2.1.1.9150: 9650545 github-actions 2025-02-15 12:50:25 +00:00
9650545d6e (v2.1.1.9150) unit tests dr. M.S. (Matthijs) Berends 2025-02-15 13:40:51 +01:00
eb5d5ad09f Built site for AMR@2.1.1.9149: 883fbe7 github-actions 2025-02-15 11:54:32 +00:00
883fbe7cfe (v2.1.1.9149) doc fix dr. M.S. (Matthijs) Berends 2025-02-15 12:46:48 +01:00
dc8269dad0 Built site for AMR@2.1.1.9148: 9d63698 github-actions 2025-02-15 11:45:44 +00:00
9d636983ac (v2.1.1.9148) scale fix, antibiogram fix dr. M.S. (Matthijs) Berends 2025-02-15 12:38:29 +01:00
6d225ab56e Built site for AMR@2.1.1.9147: d94efb0 github-actions 2025-02-14 13:23:46 +00:00
d94efb0f5e (v2.1.1.9147) scale fixes and WISCA update, fix conserved capped values dr. M.S. (Matthijs) Berends 2025-02-14 14:16:46 +01:00
97df961c58 Built site for AMR@2.1.1.9146: bd2887b github-actions 2025-02-13 18:57:22 +00:00
bd2887bcd4 (v2.1.1.9146) new scale_*_sir() functions dr. M.S. (Matthijs) Berends 2025-02-13 19:47:57 +01:00
32399fd133 Built site for AMR@2.1.1.9144: 5ff9210 github-actions 2025-02-11 16:30:48 +00:00
5ff9210c12 Update plot.Rd Matthijs Berends 2025-02-11 17:23:34 +01:00
bc6e17ff98 Built site for AMR@2.1.1.9144: 07757c9 github-actions 2025-02-11 07:56:27 +00:00
07757c933c (v2.1.1.9144) new MIC scales and fix for rescale_mic() dr. M.S. (Matthijs) Berends 2025-02-11 08:48:37 +01:00
3301f9a98a Built site for AMR@2.1.1.9143: 2171f05 github-actions 2025-02-07 18:59:11 +00:00
2171f05951 (v2.1.1.9143) unit tests dr. M.S. (Matthijs) Berends 2025-02-07 19:18:55 +01:00
41c3e0d687 Built site for AMR@2.1.1.9142: cc2bb15 github-actions 2025-02-07 18:10:06 +00:00
cc2bb151ab (v2.1.1.9142) unit test fix dr. M.S. (Matthijs) Berends 2025-02-07 19:03:02 +01:00
93d36df3a8 Built site for AMR@2.1.1.9141: 8ba2e4e github-actions 2025-02-07 17:09:00 +00:00
8ba2e4ed94 (v2.1.1.9141) new AMR selectors, eucast overwrite arg dr. M.S. (Matthijs) Berends 2025-02-07 18:01:22 +01:00
af2c21b5fa Built site for AMR@2.1.1.9140: baea432 github-actions 2025-02-05 19:58:39 +00:00
baea4323c7 (v2.1.1.9140) WISCA fix dr. M.S. (Matthijs) Berends 2025-02-05 20:48:35 +01:00
49c61d7fd3 Built site for AMR@2.1.1.9139: d84033b github-actions 2025-02-01 10:18:23 +00:00
d84033bbcb (v2.1.1.9139) unit test dr. M.S. (Matthijs) Berends 2025-02-01 11:10:42 +01:00
033d6fe9df Built site for AMR@2.1.1.9138: 6a206be github-actions 2025-01-31 22:14:32 +00:00
6a206bed12 (v2.1.1.9138) unit tests dr. M.S. (Matthijs) Berends 2025-01-31 23:06:45 +01:00
9c6ec954fa Built site for AMR@2.1.1.9137: ecc4e25 github-actions 2025-01-31 15:35:55 +00:00
ecc4e25e75 (v2.1.1.9137) examples fix dr. M.S. (Matthijs) Berends 2025-01-31 16:28:06 +01:00
15660eb423 Built site for AMR@2.1.1.9136: 22afd91 github-actions 2025-01-31 15:09:26 +00:00
22afd918e6 (v2.1.1.9136) console colours, updated Suggests, added as.ab() improvement dr. M.S. (Matthijs) Berends 2025-01-31 16:01:52 +01:00
cf81d59a10 Built site for AMR@2.1.1.9135: 700522b github-actions 2025-01-28 14:25:46 +00:00
700522b466 (v2.1.1.9135) documentation fix dr. M.S. (Matthijs) Berends 2025-01-28 15:16:55 +01:00
20c26cd21b Built site for AMR@2.1.1.9134: e740aa6 github-actions 2025-01-27 22:18:38 +00:00
e740aa691b (v2.1.1.9134) add Gamma to WISCA documentation dr. M.S. (Matthijs) Berends 2025-01-27 23:11:10 +01:00
be20858eae Built site for AMR@2.1.1.9133: 2561494 github-actions 2025-01-27 21:50:54 +00:00
2561494e06 (v2.1.1.9133) update math formulae dr. M.S. (Matthijs) Berends 2025-01-27 22:43:35 +01:00
20d0d4d3e5 Built site for AMR@2.1.1.9133: 9520977 github-actions 2025-01-27 21:16:06 +00:00
9520977a10 (v2.1.1.9133) (v2.1.1.9132) unit test, final fixes dr. M.S. (Matthijs) Berends 2025-01-27 22:06:32 +01:00
f03933940c (v2.1.1.9131) implement testthat dr. M.S. (Matthijs) Berends 2025-01-27 21:43:10 +01:00
92166c16e8 fix2 dr. M.S. (Matthijs) Berends 2025-01-27 16:34:26 +01:00
1149360b27 (v2.1.1.9129) unit test fix dr. M.S. (Matthijs) Berends 2025-01-27 16:17:03 +01:00
6efa317a81 (v2.1.1.9128) fix for bug-drug combinations dr. M.S. (Matthijs) Berends 2025-01-27 11:51:40 +01:00
7accf6ff13 (v2.1.1.9127) unit tests dr. M.S. (Matthijs) Berends 2025-01-27 10:46:43 +01:00
66833b4f5a (v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper dr. M.S. (Matthijs) Berends 2025-01-26 23:01:17 +01:00
322b29a823 Built site for AMR@2.1.1.9125: 92c4fc0 github-actions 2025-01-17 11:18:49 +00:00
92c4fc0f94 (v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors' dr. M.S. (Matthijs) Berends 2025-01-17 12:09:39 +01:00
c3f2517428 Built site for AMR@2.1.1.9123: 1697ad3 github-actions 2025-01-16 11:03:29 +00:00
1697ad37ce feat: Remove leading equal signs before mic levels (#181) Edwin van Leeuwen 2025-01-16 10:57:25 +00:00
71ff130527 Built site for AMR@2.1.1.9123: 08ddbaa github-actions 2025-01-15 15:25:08 +00:00
08ddbaa930 (v2.1.1.9123) add EFF code to antibiotics data set dr. M.S. (Matthijs) Berends 2025-01-15 16:14:09 +01:00
a49e633c9c Built site for AMR@2.1.1.9122: 2e31ec1 github-actions 2024-12-20 10:03:24 +00:00
2e31ec19c3 (v2.1.1.9122) fix documentation dr. M.S. (Matthijs) Berends 2024-12-20 10:52:44 +01:00
e0542b9b1c Built site for AMR@2.1.1.9121: 15fc72f github-actions 2024-12-19 19:25:10 +00:00
15fc72fc66 (v2.1.1.9121) support tidymodels dr. M.S. (Matthijs) Berends 2024-12-19 20:17:15 +01:00
62b90c777c Built site for AMR@2.1.1.9120: 8249cfd github-actions 2024-12-15 19:39:38 +00:00
8249cfda46 (v2.1.1.9120) unit test fix dr. M.S. (Matthijs) Berends 2024-12-15 20:32:55 +01:00
fa577c3071 Built site for AMR@2.1.1.9118: 7e7db6b github-actions 2024-12-15 19:23:39 +00:00
7e7db6bb81 support for Dutch national MDR guideline dr. M.S. (Matthijs) Berends 2024-12-15 20:15:52 +01:00
d7de1bc33d (v2.1.1.9118) move ggplot2 plotting functions to general 'plotting' man page dr. M.S. (Matthijs) Berends 2024-12-14 19:41:15 +01:00
367c8e38b7 Built site for AMR@2.1.1.9117: bfef094 github-actions 2024-12-13 09:42:42 +00:00
bfef094bbc (v2.1.1.9117) fix unit tests for old R versions dr. M.S. (Matthijs) Berends 2024-12-13 10:35:17 +01:00
9a8d9ff1f2 Built site for AMR@2.1.1.9116: 175a677 github-actions 2024-12-13 08:54:23 +00:00
175a6777f3 (v2.1.1.9116) selectors as separate functions dr. M.S. (Matthijs) Berends 2024-12-13 09:44:54 +01:00
350e6e4c50 Built site for AMR@2.1.1.9112: e231352 github-actions 2024-12-09 17:48:59 +00:00
e231352617 website update dr. M.S. (Matthijs) Berends 2024-12-09 18:42:47 +01:00
5def32a932 Built site for AMR@2.1.1.9112: e0dc7a8 github-actions 2024-12-09 13:50:15 +00:00
e0dc7a86d7 website update dr. M.S. (Matthijs) Berends 2024-12-09 14:44:11 +01:00
95b6c9295f Built site for AMR@2.1.1.9112: 61f2890 github-actions 2024-12-09 09:37:14 +00:00
61f2890993 website update dr. M.S. (Matthijs) Berends 2024-12-09 10:30:02 +01:00
8a7fcc217d Built site for AMR@2.1.1.9112: 419cb5b github-actions 2024-12-07 19:12:04 +00:00
419cb5b9c4 (v2.1.1.9112) unit test dr. M.S. (Matthijs) Berends 2024-12-06 18:01:54 +01:00
0d24681106 Built site for AMR@2.1.1.9111: 0488d00 github-actions 2024-12-06 14:51:52 +00:00
0488d00f20 (v2.1.1.9111) add betalactams_with_inhibitor(), fixes #175 dr. M.S. (Matthijs) Berends 2024-12-06 15:44:20 +01:00
d63b10a2a7 Built site for AMR@2.1.1.9110: 059618e github-actions 2024-11-21 21:31:25 +00:00
059618e710 (v2.1.1.9110) update Py pkg dr. M.S. (Matthijs) Berends 2024-11-21 22:23:40 +01:00
94ecdb9614 Built site for AMR@2.1.1.9109: 7f4ea96 github-actions 2024-11-21 21:10:41 +00:00
7f4ea96c09 (v2.1.1.9109) another version bump dr. M.S. (Matthijs) Berends 2024-11-21 22:02:34 +01:00
38bb36ca19 (v2.1.1.9108) version update dr. M.S. (Matthijs) Berends 2024-11-21 21:58:05 +01:00
0fda130a0b (v2.1.1.9107) new pkg knowledge for AMR dr. M.S. (Matthijs) Berends 2024-11-21 12:02:58 +01:00
ec77702529 Built site for AMR@2.1.1.9106: 31a0da0 github-actions 2024-11-21 10:31:50 +00:00
31a0da0d3a (v2.1.1.9106) bump version nr for Python testing dr. M.S. (Matthijs) Berends 2024-11-21 11:22:37 +01:00
19d75dd4e4 Built site for AMR@2.1.1.9103: a80bb51 github-actions 2024-11-21 10:14:03 +00:00
a80bb5146e add Python package to repo dr. M.S. (Matthijs) Berends 2024-11-21 11:07:55 +01:00
4c4a60b950 Built site for AMR@2.1.1.9103: 87271d2 github-actions 2024-11-21 09:17:08 +00:00
87271d261a add Python package to repo dr. M.S. (Matthijs) Berends 2024-11-21 10:06:26 +01:00
31a5475cc7 Built site for AMR@2.1.1.9103: f424c39 github-actions 2024-10-18 09:08:18 +00:00
f424c39474 (v2.1.1.9103) add gpt training file to commit dr. M.S. (Matthijs) Berends 2024-10-18 11:00:58 +02:00