Claude
0cc154257a
Qualify all {.help} tags with AMR:: and convert backtick ?func references
...
- Add AMR:: namespace prefix and trailing () to all {.help} cli markup
so they render as clickable help links (e.g. {.help AMR::as.sir}())
- Convert `?funcname` backtick-quoted help references to {.help AMR::funcname}()
in aa_helper_functions.R, custom_eucast_rules.R, interpretive_rules.R,
key_antimicrobials.R, mo.R, plotting.R, resistance_predict.R, and sir.R
- Skipped `?proportion` in sir_calc.R as 'proportion' is not exported
https://claude.ai/code/session_01XHWLohiSTdZvCutwD7ag2b
2026-03-18 20:06:52 +00:00
499c830ee7
(v3.0.1.9020) unit test fixes
2026-02-09 13:16:36 +01:00
ba4c159154
(v3.0.1.9019) Wildtype/Non-wildtype support, and start with interpretive_rules()
...
Fixes #246
Fixes #254
Fixes #255
Fixes #256
2026-02-08 23:15:40 +01:00
4b171745de
(v2.1.1.9276) mdro() fix
2025-05-15 10:39:48 +02:00
40d7a971c3
(v2.1.1.9236) documentation
2025-04-12 11:46:42 +02:00
36fd99e1f4
(v2.1.1.9235) New website!
2025-04-08 15:54:30 +01:00
1fdab84103
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
63099cd81e
(v2.1.1.9232) is.mic() iteration, documentation cleanup
2025-03-31 10:51:31 +02:00
f7938289eb
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
640888f408
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
bdbf5198a2
(v2.1.1.9050) vctrs fix for sir, small documentation fixes
2024-06-15 15:33:49 +02:00
9bf7584d58
(v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N
2024-06-14 22:39:01 +02:00
08a27922a8
new SDD and N for as.sir()
2024-05-20 15:27:04 +02:00
c7461766ce
Remove RSI from package, add extra MIC scale functions
2023-12-03 11:34:48 +01:00
acb534102b
new species groups, updated clinical breakpoints
2023-07-08 17:30:05 +02:00
9591688811
documentation update
2023-05-27 10:39:22 +02:00
262598b8d7
support for old rsi arguments
2023-03-11 14:24:34 +01:00
dad25302f2
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
6016547f1f
support for dplyr 1.1.0
2023-02-15 17:02:10 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR
2023-01-21 23:47:20 +01:00
f619fb683b
support new mo codes
2022-12-27 15:16:15 +01:00
7ca44fb756
cleanup and new intro logo
2022-11-13 13:44:25 +01:00
85e2fbe4a3
remove warnings from unit tests
2022-10-19 11:47:57 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
4d050aef7c
styled, unit test fix
2022-08-28 10:31:50 +02:00
952d16de33
new, automated website
2022-08-21 16:37:20 +02:00
3b2b2be5f8
(v1.8.0.9002) as.rsi() cleanup, more informative warnings
2022-03-02 15:38:55 +01:00
25cef46c59
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
77ba4318ea
(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling
2021-12-11 13:41:31 +01:00
694cf5ba77
(v1.7.1.9054) mdro() update - fixes #49 , first_isolate() speedup
2021-11-28 23:01:26 +01:00
4e1efd902c
(v1.7.1.9022) rely on vctrs for ab selectors
2021-07-23 21:42:11 +02:00
d04e83f494
(v1.7.1.9005) ab class selectors for R-3.0 and R-3.1
2021-06-22 12:16:42 +02:00
99be4c7e7e
(v1.7.1.9002) ab class selectors update
2021-06-14 22:04:04 +02:00
f406319503
(v1.7.0.9000) package size
2021-05-30 22:14:38 +02:00
be49131ed7
(v1.6.0.9043) translation update
2021-05-17 19:43:01 +02:00
29dbfa2f49
(v1.6.0.9021) join functions update
2021-05-12 18:15:03 +02:00
a9fd4aa49f
(v1.6.0.9013) website update
2021-04-29 17:16:30 +02:00
c5fff1c95c
(v1.6.0.9011) unit tests
2021-04-27 10:27:13 +02:00
93683a4ae2
(v1.6.0.9010) big first_isolate() update
2021-04-26 23:57:37 +02:00
