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mirror of https://github.com/msberends/AMR.git synced 2026-03-19 17:02:24 +01:00
Commit Graph

14 Commits

Author SHA1 Message Date
Claude
10c00ff606 Implement cli::code_highlight() for R code examples in messages (issue #191)
Add highlight_code() helper that wraps cli::code_highlight() when cli >= 3.0.0
is available, falling back to plain code otherwise. Apply it to all inline
R code examples embedded in message/warning/stop strings across the package.

Also convert remaining backtick-quoted function and argument references in
messaging calls to proper cli markup: {.help AMR::fn}(), {.arg arg},
{.code expr}, and {.pkg pkg} throughout ab.R, ab_from_text.R, av_from_text.R,
amr_selectors.R, count.R, custom_antimicrobials.R, custom_microorganisms.R,
interpretive_rules.R, mo.R, mo_property.R, sir.R, sir_calc.R.

Fixes #191

https://claude.ai/code/session_01XHWLohiSTdZvCutwD7ag2b
2026-03-18 22:23:39 +00:00
40d7a971c3 (v2.1.1.9236) documentation 2025-04-12 11:46:42 +02:00
36fd99e1f4 (v2.1.1.9235) New website! 2025-04-08 15:54:30 +01:00
1fdab84103 (v2.1.1.9233) chore: make all argument texts full sentences 2025-03-31 14:53:24 +02:00
63099cd81e (v2.1.1.9232) is.mic() iteration, documentation cleanup 2025-03-31 10:51:31 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
dad25302f2 make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
19fd0ef121 sort sir history 2023-01-23 15:01:21 +01:00
593d740b84 documentation, file permissions 2023-01-19 12:54:53 +01:00
f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
7ca44fb756 cleanup and new intro logo 2022-11-13 13:44:25 +01:00
Dr. Matthijs Berends
496c08d851 Implement extensive support for antiviral agents support (#77) 2022-11-13 08:46:10 +01:00