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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 06:06:12 +01:00
Commit Graph

36 Commits

Author SHA1 Message Date
5c4d8fcd2a (v2.1.1.9095) Python support 2024-10-15 17:12:55 +02:00
ac1c40d8bb (v2.1.1.9081) HUGE microorganisms update for fungi! 2024-09-29 22:17:56 +02:00
1ca40e8d67 (v2.1.1.9079) fix for uti in as.sir() 2024-09-24 15:34:12 +02:00
127892430d (v2.1.1.9078) 12 new formatting formats for antibiogram(), prepare for Bayesian WISCA 2024-09-22 11:45:51 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
9bf7584d58 (v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N 2024-06-14 22:39:01 +02:00
08a27922a8 new SDD and N for as.sir() 2024-05-20 15:27:04 +02:00
35f095cceb fixes #148 2024-04-23 09:34:05 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
549790c2a6 website 2023-03-20 21:59:50 +01:00
80cfc503c2 check for 2.0 2023-03-12 13:02:37 +01:00
262598b8d7 support for old rsi arguments 2023-03-11 14:24:34 +01:00
92029c9e95 remove note 2023-02-24 10:31:36 +01:00
049baf0a71 fix for antibiograms on R < 3.5 2023-02-24 09:43:10 +01:00
e70f2cd32c knitr format 2023-02-23 16:27:40 +01:00
a84101db08 N for only 1 AB in 2023-02-22 16:26:13 +01:00
551aaf6517 auto-remove missing ABs in antibiogram() 2023-02-22 16:00:52 +01:00
c2cfc5ef84 fix for antibiogram(), transform WHONET data set to sir 2023-02-22 15:40:05 +01:00
dad25302f2 make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
8d902410f9 unit tests 2023-02-18 14:56:06 +01:00
ba255ddb00 website 2023-02-18 11:57:17 +01:00
e890360986 website syntax update 2023-02-17 11:39:00 +01:00
714a048fa9 italicise antibiogram 2023-02-17 09:42:51 +01:00
ef716f6ee3 doc fix 2023-02-15 17:16:40 +01:00
3396236eef unit test fixes 2023-02-13 16:56:25 +01:00
b6d2b1398d Fix for antibiogram() in R <=3.4 2023-02-13 10:21:43 +01:00
45a9697c84 unit tests 2023-02-12 17:10:48 +01:00
c740967cf2 fix for binding rows 2023-02-12 11:20:14 +01:00
c51fb24363 pm_bind_rows 2023-02-11 22:28:48 +01:00
2007c3eef3 bind_rows 2023-02-10 17:09:48 +01:00
bc434db835 bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
aa48c6bf53 pm fixes 2023-02-08 16:51:41 +01:00
f7dd890b79 fixes 2023-02-06 12:38:52 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00